-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_309

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107260_t
Valid prediction for GlimmerHMM_glimmerT_61673-T1
Couldn't classify 3444, 3536
Sorry, prediction snap_scaffold_309-snap.2-T1 fails validation.
(ATG)	 AG	489-787	GT	AAG
(AGG)	 AG	1465-1677	GT	ATG
(CGT)	 AG	3444-3536	GT	CAG
-recovered snap_scaffold_309-snap.2-T1, initial, 489, 787
-recovered snap_scaffold_309-snap.2-T1, internal, 489, 787
-recovered snap_scaffold_309-snap.2-T1, internal, 1465, 1677
-recovered snap_scaffold_309-snap.2-T1, internal, 3444, 3536

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107261_t
Couldn't classify 8078, 8146
Sorry, prediction snap_scaffold_309-snap.1-T1 fails validation.
(ATG)	 GG	5465-5512	GT	GGG
(GCG)	 AG	6780-6848	GT	CAG
(GGA)	 AG	8078-8146	GT	AAG
-recovered snap_scaffold_309-snap.1-T1, initial, 5465, 5512
-recovered snap_scaffold_309-snap.1-T1, internal, 6780, 6848
-recovered snap_scaffold_309-snap.1-T1, internal, 8078, 8146

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2836, rend_intergenic: 489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8300
-exon list size: 23


building trellis

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28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
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64.0    
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96.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2836, rend_intergenic: 489  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support