-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3089

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 311, 324
Couldn't classify 954, 1022
Sorry, prediction GeneMark_model.110796_t fails validation.
(GCG)	 AG	311-324	GT	GAG
(CAG)	 AG	355-376	GT	AGG
(GGG)	 AG	610-630	GT	AAG
(GAG)	 AG	657-704	GT	AAG
(AAG)	 AG	728-765	GT	CAG
(CCT)	 AG	924-930	GT	GAG
(AGG)	 AG	954-1022	GT	GGG
-recovered GeneMark_model.110796_t, internal, 311, 324
-recovered GeneMark_model.110796_t, internal, 355, 376
-recovered GeneMark_model.110796_t, internal, 610, 630
-recovered GeneMark_model.110796_t, internal, 657, 704
-recovered GeneMark_model.110796_t, internal, 728, 765
-recovered GeneMark_model.110796_t, internal, 924, 930
-recovered GeneMark_model.110796_t, internal, 954, 1022
Couldn't classify 548, 806
Sorry, prediction snap_scaffold_3089-snap.1-T1 fails validation.
(TTC)	 AG	548-806	GT	AGG
(CCT)	 AG	924-1026	AA	AGA
-recovered snap_scaffold_3089-snap.1-T1, terminal, 924, 1026
-recovered snap_scaffold_3089-snap.1-T1, internal, 548, 806

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1070
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support