-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3088

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 329, 447
Couldn't classify 474, 600
Sorry, prediction snap_scaffold_3088-snap.1-T1 fails validation.
(GAG)	 AG	329-447	GT	GGG
(CTT)	 AG	474-600	GT	GGG
-recovered snap_scaffold_3088-snap.1-T1, internal, 329, 447
-recovered snap_scaffold_3088-snap.1-T1, internal, 474, 600

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1037, 1061
Sorry, prediction GeneMark_model.110795_t fails validation.
(ATG)	 CC	339-376	GT	AGG
(GTC)	 AG	456-566	GT	AGG
(TGT)	 AG	764-772	GT	AGG
(GGC)	 AG	1037-1061	GC	GGG
-recovered GeneMark_model.110795_t, initial, 339, 376
-recovered GeneMark_model.110795_t, internal, 456, 566
-recovered GeneMark_model.110795_t, internal, 764, 772
-recovered GeneMark_model.110795_t, internal, 1037, 1061

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1070
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support