-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3086

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 68, 140
Sorry, prediction GeneMark_model.110793_t fails validation.
(GAT)	 AG	68-140	GT	GGG
(TGT)	 AG	720-838	GT	TGG
(TAC)	 AG	869-1033	TC	AGT
-recovered GeneMark_model.110793_t, terminal, 869, 1033
-recovered GeneMark_model.110793_t, internal, 68, 140
-recovered GeneMark_model.110793_t, internal, 720, 838
Couldn't classify 720, 838
Sorry, prediction Augustus_model.g42261.t1 fails validation.
(TGT)	 AG	720-838	GT	TGG
-recovered Augustus_model.g42261.t1, internal, 720, 838
Couldn't classify 68, 140
Sorry, prediction snap_scaffold_3086-snap.1-T1 fails validation.
(GAT)	 AG	68-140	GT	GGG
(TGT)	 AG	720-838	GT	TGG
(AAC)	 AG	852-1022	AG	AGA
-recovered snap_scaffold_3086-snap.1-T1, terminal, 852, 1022
-recovered snap_scaffold_3086-snap.1-T1, internal, 68, 140
-recovered snap_scaffold_3086-snap.1-T1, internal, 720, 838

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1071
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support