-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_308

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107258_t
Couldn't classify 33, 83
Sorry, prediction GeneMark_model.107257_t fails validation.
(GGA)	 AG	33-83	GT	CAG
(GCA)	 AG	243-393	GC	AGG
-recovered GeneMark_model.107257_t, terminal, 243, 393
-recovered GeneMark_model.107257_t, internal, 33, 83
-recovered GeneMark_model.107257_t, internal, 243, 393
Valid prediction for snap_scaffold_308-snap.1-T1
add_exon() Sorry, snap_scaffold_308-snap.1-T1 2549-2828-terminal-1 is invalid.
Couldn't classify 7821, 7870
Sorry, prediction snap_scaffold_308-snap.2-T1 fails validation.
(ATG)	 AG	3064-3088	GT	ACG
(GAT)	 AG	7397-7770	GT	AAG
(CCA)	 AG	7821-7870	GT	ATG
-recovered snap_scaffold_308-snap.2-T1, initial, 3064, 3088
-recovered snap_scaffold_308-snap.2-T1, internal, 3064, 3088
-recovered snap_scaffold_308-snap.2-T1, internal, 7397, 7770
-recovered snap_scaffold_308-snap.2-T1, internal, 7821, 7870

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8309
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support