-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3061

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 514, 590
Couldn't classify 1020, 1040
Sorry, prediction GeneMark_model.110775_t fails validation.
(GCC)	 AG	514-590	GT	GGG
(AGG)	 AG	615-626	GT	GGG
(AGG)	 AG	650-661	GT	GGG
(AGG)	 AG	685-705	GT	TGG
(GGG)	 AG	726-807	GT	TGG
(GAG)	 AG	1020-1040	GT	AGG
-recovered GeneMark_model.110775_t, internal, 514, 590
-recovered GeneMark_model.110775_t, internal, 615, 626
-recovered GeneMark_model.110775_t, internal, 650, 661
-recovered GeneMark_model.110775_t, internal, 685, 705
-recovered GeneMark_model.110775_t, internal, 726, 807
-recovered GeneMark_model.110775_t, internal, 1020, 1040

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1074
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support