-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3056

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 283, 354
Couldn't classify 1035, 1058
Sorry, prediction GeneMark_model.110772_t fails validation.
(GCC)	 AG	283-354	GT	ACG
(GAC)	 AG	382-452	GT	GAG
(AAT)	 AG	479-517	GT	AGG
(AAA)	 AG	540-560	GT	GAG
(GGG)	 AG	600-756	GT	CGG
(CAG)	 AG	786-865	GT	CTG
(GTG)	 AG	961-996	GT	GGG
(AGA)	 AG	1035-1058	GT	GAG
-recovered GeneMark_model.110772_t, internal, 283, 354
-recovered GeneMark_model.110772_t, internal, 382, 452
-recovered GeneMark_model.110772_t, internal, 479, 517
-recovered GeneMark_model.110772_t, internal, 540, 560
-recovered GeneMark_model.110772_t, internal, 600, 756
-recovered GeneMark_model.110772_t, internal, 786, 865
-recovered GeneMark_model.110772_t, internal, 961, 996
-recovered GeneMark_model.110772_t, internal, 1035, 1058

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1075
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support