-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3053

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 57, 144
Couldn't classify 1014, 1040
Sorry, prediction GeneMark_model.110771_t fails validation.
(GAT)	 AG	57-144	GT	AGG
(CTC)	 AG	165-224	GT	TTG
(TGT)	 AG	488-496	GT	GAG
(TGA)	 AG	516-530	GT	GTG
(CGT)	 AG	554-568	GT	GTG
(TGT)	 AG	616-636	GT	GCG
(TGA)	 AG	654-662	GT	GAG
(TGA)	 AG	900-920	GT	GGG
(TGT)	 AG	1014-1040	GT	GAG
-recovered GeneMark_model.110771_t, internal, 57, 144
-recovered GeneMark_model.110771_t, internal, 165, 224
-recovered GeneMark_model.110771_t, internal, 488, 496
-recovered GeneMark_model.110771_t, internal, 516, 530
-recovered GeneMark_model.110771_t, internal, 554, 568
-recovered GeneMark_model.110771_t, internal, 616, 636
-recovered GeneMark_model.110771_t, internal, 654, 662
-recovered GeneMark_model.110771_t, internal, 900, 920
-recovered GeneMark_model.110771_t, internal, 1014, 1040

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1076
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support