-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3048

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3048-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_63275-T1
Couldn't classify 1, 523
Sorry, prediction Augustus_model.g42253.t1 fails validation.
(TGA)	 TA	1-523	AA	GAA
Couldn't classify 9, 93
Couldn't classify 827, 923
Sorry, prediction GeneMark_model.110769_t fails validation.
(CAC)	 AG	9-93	GT	AGG
(ACA)	 AG	325-519	GT	CAG
(ATC)	 AG	827-923	GT	CTG
-recovered GeneMark_model.110769_t, internal, 9, 93
-recovered GeneMark_model.110769_t, internal, 325, 519
-recovered GeneMark_model.110769_t, internal, 827, 923

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1077
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support