-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3047

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 900, 998
Sorry, prediction Augustus_model.g42252.t1 fails validation.
(ATC)	 AG	900-998	GT	TGG
-recovered Augustus_model.g42252.t1, internal, 900, 998

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 456, 524
Couldn't classify 1015, 1027
Sorry, prediction GeneMark_model.110768_t fails validation.
(ACA)	 AG	456-524	GT	GAG
(TTA)	 AG	546-578	GT	GAG
(AGA)	 AG	606-620	GT	GAG
(ATA)	 AG	644-652	GT	GAG
(AGA)	 AG	676-690	GT	GAG
(AAA)	 AG	712-738	GT	GAG
(ATA)	 AG	762-785	GT	GAG
(AGG)	 AG	1015-1027	GT	GGG
-recovered GeneMark_model.110768_t, internal, 456, 524
-recovered GeneMark_model.110768_t, internal, 546, 578
-recovered GeneMark_model.110768_t, internal, 606, 620
-recovered GeneMark_model.110768_t, internal, 644, 652
-recovered GeneMark_model.110768_t, internal, 676, 690
-recovered GeneMark_model.110768_t, internal, 712, 738
-recovered GeneMark_model.110768_t, internal, 762, 785
-recovered GeneMark_model.110768_t, internal, 1015, 1027

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1077
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support