-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3046

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 56, 67
Sorry, prediction GeneMark_model.110767_t fails validation.
(GGA)	 AG	56-67	GT	GTG
(AAG)	 AG	94-111	GT	CAG
(ACA)	 AG	229-237	GT	GCG
(AGA)	 AG	261-335	GT	GAG
(ACA)	 AG	359-367	GT	GAG
(ACA)	 AG	407-415	GT	GAG
(ACA)	 AG	435-443	GT	GAG
(CAA)	 AG	465-474	AG	AGA
-recovered GeneMark_model.110767_t, terminal, 465, 474
-recovered GeneMark_model.110767_t, internal, 56, 67
-recovered GeneMark_model.110767_t, internal, 94, 111
-recovered GeneMark_model.110767_t, internal, 229, 237
-recovered GeneMark_model.110767_t, internal, 261, 335
-recovered GeneMark_model.110767_t, internal, 359, 367
-recovered GeneMark_model.110767_t, internal, 407, 415
-recovered GeneMark_model.110767_t, internal, 435, 443

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1077
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support