-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3041

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63272-T1
Couldn't classify 77, 181
Couldn't classify 660, 798
Sorry, prediction snap_scaffold_3041-snap.1-T1 fails validation.
(GTG)	 AG	77-181	GT	AGG
(GAG)	 AG	660-798	GT	TGG
-recovered snap_scaffold_3041-snap.1-T1, internal, 77, 181
-recovered snap_scaffold_3041-snap.1-T1, internal, 660, 798
Couldn't classify 77, 181
Couldn't classify 660, 798
Sorry, prediction GeneMark_model.110763_t fails validation.
(GTG)	 AG	77-181	GT	AGG
(GAG)	 AG	660-798	GT	TGG
-recovered GeneMark_model.110763_t, internal, 77, 181
-recovered GeneMark_model.110763_t, internal, 660, 798
Couldn't classify 77, 181
Sorry, prediction Augustus_model.g42249.t1 fails validation.
(GTG)	 AG	77-181	GT	AGG
(GAG)	 AG	660-854	TC	AGT
-recovered Augustus_model.g42249.t1, terminal, 660, 854
-recovered Augustus_model.g42249.t1, internal, 77, 181

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1078
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support