-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3036

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 150, 257
Sorry, prediction GeneMark_model.110759_t fails validation.
(AGG)	 AG	150-257	GT	AGG
(GGA)	 AG	312-667	AC	AGA
add_exon() Sorry, GeneMark_model.110759_t 150-257-terminal-1 is invalid.
-recovered GeneMark_model.110759_t, terminal, 150, 257
-recovered GeneMark_model.110759_t, terminal, 312, 667
-recovered GeneMark_model.110759_t, internal, 150, 257
Couldn't classify 150, 257
Sorry, prediction snap_scaffold_3036-snap.1-T1 fails validation.
(AGG)	 AG	150-257	GT	AGG
(GGA)	 AG	312-667	AC	AGA
add_exon() Sorry, snap_scaffold_3036-snap.1-T1 150-257-terminal-1 is invalid.
-recovered snap_scaffold_3036-snap.1-T1, terminal, 150, 257
-recovered snap_scaffold_3036-snap.1-T1, terminal, 312, 667
-recovered snap_scaffold_3036-snap.1-T1, internal, 150, 257
Valid prediction for GlimmerHMM_glimmerT_63271-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63271-T1 150-310-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1078
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support