-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3034

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 742, 999
Sorry, prediction snap_scaffold_3034-snap.1-T1 fails validation.
(GCC)	 AG	742-999	GT	TGG
-recovered snap_scaffold_3034-snap.1-T1, internal, 742, 999
Couldn't classify 141, 152
Couldn't classify 742, 792
Sorry, prediction GeneMark_model.110758_t fails validation.
(AGA)	 AG	141-152	GT	CAG
(GAG)	 AG	178-321	GT	GAG
(AGA)	 AG	349-363	GT	GAG
(AGA)	 AG	387-395	GT	GAG
(AGA)	 AG	421-429	GT	GAG
(AAA)	 AG	457-471	GT	GAG
(AGA)	 AG	497-505	GT	GAG
(AGT)	 AG	529-549	GT	GAG
(AGA)	 AG	573-605	GT	GAG
(AGA)	 AG	627-635	GT	GAG
(ACT)	 AG	663-674	GT	ATG
(GCC)	 AG	742-792	GT	TTG
-recovered GeneMark_model.110758_t, internal, 141, 152
-recovered GeneMark_model.110758_t, internal, 178, 321
-recovered GeneMark_model.110758_t, internal, 349, 363
-recovered GeneMark_model.110758_t, internal, 387, 395
-recovered GeneMark_model.110758_t, internal, 421, 429
-recovered GeneMark_model.110758_t, internal, 457, 471
-recovered GeneMark_model.110758_t, internal, 497, 505
-recovered GeneMark_model.110758_t, internal, 529, 549
-recovered GeneMark_model.110758_t, internal, 573, 605
-recovered GeneMark_model.110758_t, internal, 627, 635
-recovered GeneMark_model.110758_t, internal, 663, 674
-recovered GeneMark_model.110758_t, internal, 742, 792
Valid prediction for Augustus_model.g42247.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1079
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support