-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3026

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 17, 93
Sorry, prediction GeneMark_model.110754_t fails validation.
(GGC)	 AG	17-93	GT	GGG
(ATG)	 AG	246-357	GT	TCG
(AGA)	 AG	470-488	GA	GAG
add_exon() Sorry, GeneMark_model.110754_t 246-357-initial-1 is invalid.
-recovered GeneMark_model.110754_t, initial, 246, 357
-recovered GeneMark_model.110754_t, terminal, 470, 488
-recovered GeneMark_model.110754_t, internal, 17, 93
-recovered GeneMark_model.110754_t, internal, 246, 357
Valid prediction for CodingQuarry_transcript_46386-T1
Couldn't classify 1, 93
Couldn't classify 615, 742
Sorry, prediction Augustus_model.g42246.t1 fails validation.
(TCC)	 CC	1-93	GT	GGG
(ATG)	 AG	246-357	GT	TCG
(GAG)	 AG	615-742	GT	AGG
add_exon() Sorry, Augustus_model.g42246.t1 246-357-initial-1 is invalid.
-recovered Augustus_model.g42246.t1, initial, 246, 357
-recovered Augustus_model.g42246.t1, internal, 246, 357
-recovered Augustus_model.g42246.t1, internal, 615, 742
Couldn't classify 615, 742
Sorry, prediction GlimmerHMM_glimmerT_63270-T1 fails validation.
(ATG)	 AG	81-93	GT	GGG
(ATG)	 AG	246-357	GT	TCG
(GAG)	 AG	615-742	GT	AGG
-recovered GlimmerHMM_glimmerT_63270-T1, initial, 81, 93
add_exon() Sorry, GlimmerHMM_glimmerT_63270-T1 246-357-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_63270-T1, initial, 246, 357
-recovered GlimmerHMM_glimmerT_63270-T1, internal, 81, 93
-recovered GlimmerHMM_glimmerT_63270-T1, internal, 246, 357
-recovered GlimmerHMM_glimmerT_63270-T1, internal, 615, 742
Couldn't classify 40, 93
Couldn't classify 615, 742
Sorry, prediction snap_scaffold_3026-snap.1-T1 fails validation.
(CCC)	 AG	40-93	GT	GGG
(ATG)	 AG	246-357	GT	TCG
(GAG)	 AG	615-742	GT	AGG
add_exon() Sorry, snap_scaffold_3026-snap.1-T1 246-357-initial-1 is invalid.
-recovered snap_scaffold_3026-snap.1-T1, initial, 246, 357
-recovered snap_scaffold_3026-snap.1-T1, internal, 40, 93
-recovered snap_scaffold_3026-snap.1-T1, internal, 246, 357
-recovered snap_scaffold_3026-snap.1-T1, internal, 615, 742
Couldn't classify 3, 93
Couldn't classify 615, 741
Sorry, prediction pasa_asmbl_40862.p1 fails validation.
(CTG)	 TC	3-93	GT	GGG
(ATG)	 AG	246-357	GT	TCG
(GAG)	 AG	615-741	GG	GAG
add_exon() Sorry, pasa_asmbl_40862.p1 246-357-initial-1 is invalid.
-recovered pasa_asmbl_40862.p1, initial, 246, 357
-recovered pasa_asmbl_40862.p1, internal, 246, 357

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 11, 34
Sorry, prediction GeneMark_model.110755_t fails validation.
(GAG)	 AG	11-34	GT	AGG
(GAG)	 AG	170-280	GT	CAG
(GAG)	 AG	303-489	GG	GAG
-recovered GeneMark_model.110755_t, terminal, 303, 489
-recovered GeneMark_model.110755_t, internal, 11, 34
-recovered GeneMark_model.110755_t, internal, 170, 280

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1080
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support