-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3023

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 129, 323
Sorry, prediction snap_scaffold_3023-snap.1-T1 fails validation.
(AGG)	 AG	129-323	GT	GGG
-recovered snap_scaffold_3023-snap.1-T1, internal, 129, 323
Valid prediction for GlimmerHMM_glimmerT_63269-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63269-T1 129-448-terminal-1 is invalid.
Couldn't classify 129, 323
Sorry, prediction Augustus_model.g42245.t1 fails validation.
(AGG)	 AG	129-323	GT	GGG
(GTG)	 AG	662-672	CT	GAC
-recovered Augustus_model.g42245.t1, terminal, 662, 672
-recovered Augustus_model.g42245.t1, internal, 129, 323
Couldn't classify 129, 408
Sorry, prediction GeneMark_model.110753_t fails validation.
(AGG)	 AG	129-408	GT	AGG
-recovered GeneMark_model.110753_t, internal, 129, 408

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1081
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support