-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3015

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10, 33
Couldn't classify 979, 1032
Sorry, prediction GeneMark_model.110749_t fails validation.
(AGA)	 AG	10-33	GT	AGG
(AGG)	 AG	56-61	GT	AGG
(GGA)	 AG	86-103	GT	AGG
(GGG)	 AG	126-131	GT	AGG
(GGA)	 AG	156-173	GT	AGG
(AAG)	 AG	196-234	GT	CAG
(AGT)	 AG	979-1032	GT	TCG
-recovered GeneMark_model.110749_t, internal, 10, 33
-recovered GeneMark_model.110749_t, internal, 56, 61
-recovered GeneMark_model.110749_t, internal, 86, 103
-recovered GeneMark_model.110749_t, internal, 126, 131
-recovered GeneMark_model.110749_t, internal, 156, 173
-recovered GeneMark_model.110749_t, internal, 196, 234
-recovered GeneMark_model.110749_t, internal, 979, 1032

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 247, 349
Sorry, prediction Augustus_model.g42244.t1 fails validation.
(ATC)	 AG	247-349	GT	CGG
-recovered Augustus_model.g42244.t1, internal, 247, 349

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1082
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support