-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3014

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63268-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63268-T1 774-1050-terminal-1 is invalid.
Couldn't classify 774, 990
Sorry, prediction snap_scaffold_3014-snap.1-T1 fails validation.
(ATC)	 AG	774-990	GT	GGG
-recovered snap_scaffold_3014-snap.1-T1, internal, 774, 990
Valid prediction for Augustus_model.g42243.t1
add_exon() Sorry, Augustus_model.g42243.t1 774-1050-terminal-1 is invalid.
Couldn't classify 41, 85
Sorry, prediction GeneMark_model.110747_t fails validation.
(AGA)	 AG	41-85	GT	CTG
(GAG)	 AG	302-410	TG	AGT
-recovered GeneMark_model.110747_t, terminal, 302, 410
-recovered GeneMark_model.110747_t, internal, 41, 85

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 54, 175
Sorry, prediction GeneMark_model.110748_t fails validation.
(CTG)	 AG	54-175	GT	GGG
(AGA)	 AG	315-329	GT	AAG
(AGA)	 AG	423-452	GT	GGG
(AGA)	 AG	475-534	GT	GGG
(CAA)	 AG	555-582	CT	GAC
-recovered GeneMark_model.110748_t, terminal, 555, 582
-recovered GeneMark_model.110748_t, internal, 54, 175
-recovered GeneMark_model.110748_t, internal, 315, 329
-recovered GeneMark_model.110748_t, internal, 423, 452
-recovered GeneMark_model.110748_t, internal, 475, 534

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1083
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support