-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3013

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 12, 41
Sorry, prediction GeneMark_model.110745_t fails validation.
(AGG)	 AG	12-41	GT	GAG
(AGT)	 AG	64-75	GT	GAG
(GCA)	 AG	210-460	GT	AGG
(GTC)	 AG	522-540	GT	GCG
(AGA)	 AG	563-652	GT	AGG
(GAC)	 AG	680-694	GT	AGG
(AGG)	 AG	716-734	GG	GAG
-recovered GeneMark_model.110745_t, terminal, 716, 734
-recovered GeneMark_model.110745_t, internal, 12, 41
-recovered GeneMark_model.110745_t, internal, 64, 75
-recovered GeneMark_model.110745_t, internal, 210, 460
-recovered GeneMark_model.110745_t, internal, 522, 540
-recovered GeneMark_model.110745_t, internal, 563, 652
-recovered GeneMark_model.110745_t, internal, 680, 694
Couldn't classify 246, 460
Couldn't classify 631, 730
Sorry, prediction snap_scaffold_3013-snap.1-T1 fails validation.
(CCC)	 AG	246-460	GT	AGG
(AGC)	 AG	631-730	GT	AGG
-recovered snap_scaffold_3013-snap.1-T1, internal, 246, 460
-recovered snap_scaffold_3013-snap.1-T1, internal, 631, 730
Couldn't classify 330, 460
Couldn't classify 631, 730
Sorry, prediction Augustus_model.g42242.t1 fails validation.
(CCT)	 AG	330-460	GT	AGG
(AGC)	 AG	631-730	GT	AGG
-recovered Augustus_model.g42242.t1, internal, 330, 460
-recovered Augustus_model.g42242.t1, internal, 631, 730

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 46, 78
Sorry, prediction GeneMark_model.110746_t fails validation.
(AGA)	 AG	46-78	GT	GTG
(GAG)	 AG	223-319	CA	GAC
-recovered GeneMark_model.110746_t, terminal, 223, 319
-recovered GeneMark_model.110746_t, internal, 46, 78

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1083
-exon list size: 23


building trellis

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12.0    
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28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
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56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
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92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support