-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_301

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107232_t
Couldn't classify 1478, 1918
Sorry, prediction snap_scaffold_301-snap.1-T1 fails validation.
(AAA)	 AG	1478-1918	GT	AGG
(GTC)	 AG	4556-4808	GT	AGG
(GCG)	 AG	4966-5152	GT	TGG
(GTG)	 AG	5571-5650	GT	CGG
(ATT)	 AG	6272-6338	GA	GAG
-recovered snap_scaffold_301-snap.1-T1, terminal, 4556, 4808
-recovered snap_scaffold_301-snap.1-T1, terminal, 6272, 6338
-recovered snap_scaffold_301-snap.1-T1, internal, 1478, 1918
-recovered snap_scaffold_301-snap.1-T1, internal, 4556, 4808
-recovered snap_scaffold_301-snap.1-T1, internal, 4966, 5152
-recovered snap_scaffold_301-snap.1-T1, internal, 5571, 5650

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2776, 2927
Sorry, prediction snap_scaffold_301-snap.2-T1 fails validation.
(ATC)	 AG	2776-2927	GT	CAG
(ACC)	 AG	3062-3315	GT	CAG
(AAC)	 AG	3343-3512	GT	AAG
(ACC)	 AG	3627-3884	GT	AGG
(GAA)	 AG	6470-6542	AC	GAA
-recovered snap_scaffold_301-snap.2-T1, terminal, 6470, 6542
-recovered snap_scaffold_301-snap.2-T1, internal, 2776, 2927
-recovered snap_scaffold_301-snap.2-T1, internal, 3062, 3315
-recovered snap_scaffold_301-snap.2-T1, internal, 3343, 3512
-recovered snap_scaffold_301-snap.2-T1, internal, 3627, 3884
Couldn't classify 8017, 8171
Sorry, prediction GeneMark_model.107231_t fails validation.
(ATG)	 CA	7898-7995	GT	AAG
(AGG)	 AG	8017-8171	GT	TGG
-recovered GeneMark_model.107231_t, initial, 7898, 7995
-recovered GeneMark_model.107231_t, internal, 8017, 8171
Valid prediction for GlimmerHMM_glimmerT_61660-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61660-T1 2760-2989-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6338, rend_intergenic: 1878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8419
-exon list size: 55


building trellis

1.8    
3.5    
5.3    
7.0    
8.8    
10.5    
12.3    
14.0    
15.8    
17.5    
19.3    
21.1    
22.8    
24.6    
26.3    
28.1    
29.8    
31.6    
33.3    
35.1    
36.8    
38.6    
40.4    
42.1    
43.9    
45.6    
47.4    
49.1    
50.9    
52.6    
54.4    
56.1    
57.9    
59.6    
61.4    
63.2    
64.9    
66.7    
68.4    
70.2    
71.9    
73.7    
75.4    
77.2    
78.9    
80.7    
82.5    
84.2    
86.0    
87.7    
89.5    
91.2    
93.0    
94.7    
96.5    
98.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6338, rend_intergenic: 1878  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support