-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3004

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 113, 372
Sorry, prediction snap_scaffold_3004-snap.1-T1 fails validation.
(AAC)	 AG	113-372	GT	GGG
(ACC)	 AG	600-710	AG	GAA
-recovered snap_scaffold_3004-snap.1-T1, terminal, 600, 710
-recovered snap_scaffold_3004-snap.1-T1, internal, 113, 372
Couldn't classify 21, 59
Couldn't classify 914, 1012
Sorry, prediction GeneMark_model.110739_t fails validation.
(CAG)	 AG	21-59	GT	GAG
(AGA)	 AG	228-368	GT	GAG
(GAA)	 AG	639-737	GT	TGG
(GCA)	 AG	769-792	GT	AGG
(GGG)	 AG	914-1012	GT	ATG
add_exon() Sorry, GeneMark_model.110739_t 228-368-terminal-1 is invalid.
-recovered GeneMark_model.110739_t, terminal, 228, 368
-recovered GeneMark_model.110739_t, internal, 21, 59
-recovered GeneMark_model.110739_t, internal, 228, 368
-recovered GeneMark_model.110739_t, internal, 639, 737
-recovered GeneMark_model.110739_t, internal, 769, 792
-recovered GeneMark_model.110739_t, internal, 914, 1012

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g42241.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1084
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support