-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3003

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 54, 148
Couldn't classify 826, 1018
Sorry, prediction GeneMark_model.110738_t fails validation.
(CTG)	 AG	54-148	GT	CTG
(GGT)	 AG	826-1018	GT	AGG
-recovered GeneMark_model.110738_t, internal, 54, 148
-recovered GeneMark_model.110738_t, internal, 826, 1018
Couldn't classify 54, 158
Couldn't classify 857, 1018
Sorry, prediction Augustus_model.g42240.t1 fails validation.
(CTG)	 AG	54-158	GT	AAG
(GTG)	 AG	857-1018	GT	AGG
-recovered Augustus_model.g42240.t1, internal, 54, 158
-recovered Augustus_model.g42240.t1, internal, 857, 1018
Couldn't classify 54, 158
Couldn't classify 857, 1018
Sorry, prediction snap_scaffold_3003-snap.1-T1 fails validation.
(CTG)	 AG	54-158	GT	AAG
(GTG)	 AG	857-1018	GT	AGG
-recovered snap_scaffold_3003-snap.1-T1, internal, 54, 158
-recovered snap_scaffold_3003-snap.1-T1, internal, 857, 1018
Couldn't classify 857, 997
Sorry, prediction GlimmerHMM_glimmerT_63267-T1 fails validation.
(ATG)	 AG	69-158	GT	AAG
(GTG)	 AG	857-997	GT	AGG
-recovered GlimmerHMM_glimmerT_63267-T1, initial, 69, 158
-recovered GlimmerHMM_glimmerT_63267-T1, internal, 69, 158
-recovered GlimmerHMM_glimmerT_63267-T1, internal, 857, 997

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1084
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support