-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3002

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 51, 65
Couldn't classify 767, 838
Sorry, prediction GeneMark_model.110737_t fails validation.
(AAC)	 AG	51-65	GT	CGG
(GGG)	 AG	92-364	GT	GAG
(CAG)	 AG	767-838	GT	GAG
-recovered GeneMark_model.110737_t, internal, 51, 65
-recovered GeneMark_model.110737_t, internal, 92, 364
-recovered GeneMark_model.110737_t, internal, 767, 838

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 304, 401
Couldn't classify 875, 962
Sorry, prediction snap_scaffold_3002-snap.1-T1 fails validation.
(GAG)	 AG	304-401	GT	CGG
(GGA)	 AG	875-962	GT	AGG
-recovered snap_scaffold_3002-snap.1-T1, internal, 304, 401
-recovered snap_scaffold_3002-snap.1-T1, internal, 875, 962
Couldn't classify 304, 401
Sorry, prediction Augustus_model.g42239.t1 fails validation.
(GAG)	 AG	304-401	GT	CGG
(GGA)	 AG	875-1004	AA	AGA
-recovered Augustus_model.g42239.t1, terminal, 875, 1004
-recovered Augustus_model.g42239.t1, internal, 304, 401
Couldn't classify 304, 401
Sorry, prediction GlimmerHMM_glimmerT_63266-T1 fails validation.
(GAG)	 AG	304-401	GT	CGG
(GGA)	 AG	875-1004	AA	AGA
-recovered GlimmerHMM_glimmerT_63266-T1, terminal, 875, 1004
-recovered GlimmerHMM_glimmerT_63266-T1, internal, 304, 401

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1084
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support