-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_300

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61657-T1
Valid prediction for pasa_asmbl_40851.p1
Valid prediction for snap_scaffold_300-snap.1-T1
Valid prediction for CodingQuarry_transcript_46383-T1
Valid prediction for CodingQuarry_transcript_46384-T1
Couldn't classify 1589, 1706
Sorry, prediction GeneMark_model.107228_t fails validation.
(CGG)	 AG	1589-1706	GT	CAG
(GCT)	 AG	2165-2358	GT	CAG
(CCC)	 AG	2763-2944	GT	AGG
(AAG)	 AG	3160-3325	GT	GGG
(AGT)	 AG	3590-3741	AG	AGA
-recovered GeneMark_model.107228_t, terminal, 3590, 3741
-recovered GeneMark_model.107228_t, internal, 1589, 1706
-recovered GeneMark_model.107228_t, internal, 2165, 2358
-recovered GeneMark_model.107228_t, internal, 2763, 2944
-recovered GeneMark_model.107228_t, internal, 3160, 3325
Valid prediction for GlimmerHMM_glimmerT_61656-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61656-T1 2165-2372-terminal-1 is invalid.
Valid prediction for HiQ_model.g40995.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107230_t
Valid prediction for snap_scaffold_300-snap.3-T1
Valid prediction for Augustus_model.g40996.t1
Couldn't classify 1293, 1352
Couldn't classify 1401, 1586
Sorry, prediction CodingQuarry_transcript_46385-T1 fails validation.
(ATG)	 CT	1293-1352	CT	ACC
(CTG)	 AC	1401-1586	CA	GAC
Valid prediction for GlimmerHMM_glimmerT_61659-T1
Valid prediction for snap_scaffold_300-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61658-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4141, rend_intergenic: 1335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8428
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4141, rend_intergenic: 1335  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support