-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_9443895-9670792

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.11935_t
Valid prediction for GeneMark_model.11941_t
Valid prediction for snap_scaffold_3-snap.1886-T1
Valid prediction for GeneMark_model.11976_t
Valid prediction for GlimmerHMM_glimmerT_7220-T1
Valid prediction for GeneMark_model.12005_t
Valid prediction for snap_scaffold_3-snap.1903-T1
Valid prediction for GeneMark_model.11978_t
Valid prediction for GeneMark_model.12003_t
Valid prediction for GeneMark_model.11955_t
Valid prediction for GlimmerHMM_glimmerT_7230-T1
Valid prediction for GeneMark_model.11943_t
Valid prediction for GeneMark_model.11962_t
Valid prediction for GeneMark_model.11960_t
Valid prediction for GeneMark_model.11949_t
Valid prediction for GeneMark_model.12002_t
Valid prediction for GeneMark_model.11965_t
Valid prediction for GlimmerHMM_glimmerT_7249-T1
Valid prediction for snap_scaffold_3-snap.1875-T1
Valid prediction for GeneMark_model.11937_t
Valid prediction for Augustus_model.g4753.t1
Valid prediction for GeneMark_model.11983_t
Valid prediction for snap_scaffold_3-snap.1914-T1
Valid prediction for snap_scaffold_3-snap.1897-T1
Valid prediction for GeneMark_model.11970_t
Valid prediction for snap_scaffold_3-snap.1881-T1
Valid prediction for snap_scaffold_3-snap.1884-T1
Valid prediction for snap_scaffold_3-snap.1877-T1
Valid prediction for GeneMark_model.11947_t
Valid prediction for GlimmerHMM_glimmerT_7243-T1
Valid prediction for GeneMark_model.11989_t
Valid prediction for pasa_asmbl_40185.p1
Valid prediction for GlimmerHMM_glimmerT_7235-T1
Valid prediction for GeneMark_model.11979_t
Valid prediction for GeneMark_model.11974_t
Valid prediction for GlimmerHMM_glimmerT_7250-T1
Valid prediction for GeneMark_model.12000_t
Valid prediction for GeneMark_model.11958_t
Valid prediction for snap_scaffold_3-snap.1889-T1
Valid prediction for GlimmerHMM_glimmerT_7239-T1
Valid prediction for GlimmerHMM_glimmerT_7222-T1
Valid prediction for CodingQuarry_transcript_46127-T1
Valid prediction for Augustus_model.g4739.t1
Valid prediction for GeneMark_model.11994_t
Valid prediction for GlimmerHMM_glimmerT_7224-T1
Valid prediction for snap_scaffold_3-snap.1883-T1
Valid prediction for snap_scaffold_3-snap.1918-T1
Valid prediction for snap_scaffold_3-snap.1916-T1
Valid prediction for GeneMark_model.11953_t
Valid prediction for GeneMark_model.11972_t
Valid prediction for GlimmerHMM_glimmerT_7252-T1
Valid prediction for snap_scaffold_3-snap.1892-T1
Valid prediction for snap_scaffold_3-snap.1907-T1
Valid prediction for Augustus_model.g4754.t1
Valid prediction for HiQ_model.g4743.t1
Valid prediction for snap_scaffold_3-snap.1873-T1
Valid prediction for snap_scaffold_3-snap.1874-T1
Valid prediction for GeneMark_model.11967_t
Valid prediction for snap_scaffold_3-snap.1879-T1
Valid prediction for GeneMark_model.11982_t
Valid prediction for Augustus_model.g4748.t1
Valid prediction for GeneMark_model.11951_t
Valid prediction for GeneMark_model.11945_t
Valid prediction for snap_scaffold_3-snap.1917-T1
Valid prediction for snap_scaffold_3-snap.1900-T1
Valid prediction for GeneMark_model.11981_t
Valid prediction for GeneMark_model.11984_t
Valid prediction for GeneMark_model.11986_t
Valid prediction for snap_scaffold_3-snap.1891-T1
Valid prediction for GeneMark_model.11966_t
Valid prediction for GeneMark_model.11933_t
Valid prediction for GeneMark_model.11998_t
Valid prediction for snap_scaffold_3-snap.1899-T1
Valid prediction for GeneMark_model.11969_t
Valid prediction for snap_scaffold_3-snap.1887-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_7253-T1
Valid prediction for GlimmerHMM_glimmerT_7233-T1
Valid prediction for GlimmerHMM_glimmerT_7254-T1
Valid prediction for snap_scaffold_3-snap.1901-T1
Couldn't classify 137563, 137869
Couldn't classify 138194, 138246
Sorry, prediction pasa_asmbl_39009.p2 fails validation.
(ACC)	 AG	137563-137869	GT	AGG
(ACG)	 AG	138194-138246	CC	CCC
-recovered pasa_asmbl_39009.p2, internal, 137563, 137869
Valid prediction for GeneMark_model.11991_t
Valid prediction for GeneMark_model.11975_t
Valid prediction for GlimmerHMM_glimmerT_7226-T1
Valid prediction for Augustus_model.g4752.t1
Valid prediction for GeneMark_model.11959_t
Valid prediction for snap_scaffold_3-snap.1902-T1
Valid prediction for Augustus_model.g4755.t1
Valid prediction for GlimmerHMM_glimmerT_7242-T1
Couldn't classify 75795, 76196
Sorry, prediction pasa_asmbl_39014.p1 fails validation.
(GAG)	 GC	75795-76196	AC	CCA
Valid prediction for Augustus_model.g4744.t1
Valid prediction for snap_scaffold_3-snap.1921-T1
Valid prediction for snap_scaffold_3-snap.1910-T1
Valid prediction for GlimmerHMM_glimmerT_7229-T1
Valid prediction for GlimmerHMM_glimmerT_7244-T1
Valid prediction for GeneMark_model.11973_t
Valid prediction for Augustus_model.g4740.t1
Couldn't classify 71718, 71790
Sorry, prediction pasa_asmbl_39015.p1 fails validation.
(TGT)	 TG	71718-71790	GT	CGG
(ATG)	 AG	71922-72044	GT	GGG
(CCA)	 AG	72245-72348	GT	TGG
(CTT)	 AG	72470-72525	GT	AGG
(AGA)	 AG	72654-72814	GT	CGG
(AGG)	 AG	73047-73181	GT	AGG
(AAT)	 AG	73305-73385	GT	CTG
(TTT)	 AG	73526-73613	GT	AAG
(GAA)	 AG	73697-73877	GT	CAG
(CCT)	 AG	74088-74231	CC	AAC
add_exon() Sorry, pasa_asmbl_39015.p1 71922-72044-initial-1 is invalid.
-recovered pasa_asmbl_39015.p1, initial, 71922, 72044
-recovered pasa_asmbl_39015.p1, terminal, 73047, 73181
-recovered pasa_asmbl_39015.p1, terminal, 74088, 74231
-recovered pasa_asmbl_39015.p1, internal, 71922, 72044
-recovered pasa_asmbl_39015.p1, internal, 72245, 72348
-recovered pasa_asmbl_39015.p1, internal, 72470, 72525
-recovered pasa_asmbl_39015.p1, internal, 72654, 72814
-recovered pasa_asmbl_39015.p1, internal, 73047, 73181
-recovered pasa_asmbl_39015.p1, internal, 73305, 73385
-recovered pasa_asmbl_39015.p1, internal, 73526, 73613
-recovered pasa_asmbl_39015.p1, internal, 73697, 73877
Couldn't classify 68294, 68336
Couldn't classify 69818, 69906
Sorry, prediction pasa_asmbl_39644.p1 fails validation.
(CCC)	 GT	68294-68336	GT	GGG
(CCA)	 AG	68537-68640	GT	TGG
(CTT)	 AG	68762-68817	GT	AGG
(AGA)	 AG	68946-69106	GT	CGG
(AGG)	 AG	69339-69473	GT	AGG
(AAT)	 AG	69597-69677	GT	CTG
(TTT)	 AG	69818-69906	TA	AGT
-recovered pasa_asmbl_39644.p1, terminal, 69339, 69473
-recovered pasa_asmbl_39644.p1, internal, 68537, 68640
-recovered pasa_asmbl_39644.p1, internal, 68762, 68817
-recovered pasa_asmbl_39644.p1, internal, 68946, 69106
-recovered pasa_asmbl_39644.p1, internal, 69339, 69473
-recovered pasa_asmbl_39644.p1, internal, 69597, 69677
Couldn't classify 79186, 80241
Sorry, prediction pasa_asmbl_39013.p1 fails validation.
(ATG)	 GA	79186-80241	TT	CAT
Valid prediction for GeneMark_model.11957_t
Valid prediction for GlimmerHMM_glimmerT_7238-T1
Valid prediction for Augustus_model.g4736.t1
Valid prediction for Augustus_model.g4742.t1
Valid prediction for GeneMark_model.12004_t
Valid prediction for CodingQuarry_transcript_46128-T1
Valid prediction for GeneMark_model.11956_t
Valid prediction for GeneMark_model.11940_t
Valid prediction for GeneMark_model.11964_t
Valid prediction for GeneMark_model.11942_t
Valid prediction for snap_scaffold_3-snap.1894-T1
Valid prediction for GeneMark_model.11944_t
Valid prediction for Augustus_model.g4737.t1
Couldn't classify 83381, 83530
Couldn't classify 85056, 85236
Sorry, prediction pasa_asmbl_39012.p1 fails validation.
(CCC)	 CT	83381-83530	GT	AGG
(GGA)	 AG	83872-84039	GT	AGG
(AGC)	 AG	84219-84340	GT	AGG
(CAG)	 AG	85056-85236	GT	AGG
-recovered pasa_asmbl_39012.p1, internal, 83872, 84039
-recovered pasa_asmbl_39012.p1, internal, 84219, 84340
-recovered pasa_asmbl_39012.p1, internal, 85056, 85236
Valid prediction for snap_scaffold_3-snap.1909-T1
Valid prediction for GlimmerHMM_glimmerT_7225-T1
Valid prediction for GeneMark_model.11993_t
Valid prediction for GeneMark_model.11963_t
Valid prediction for GlimmerHMM_glimmerT_7234-T1
Valid prediction for Augustus_model.g4749.t1
Valid prediction for snap_scaffold_3-snap.1906-T1
Valid prediction for GlimmerHMM_glimmerT_7221-T1
Valid prediction for snap_scaffold_3-snap.1872-T1
Valid prediction for GeneMark_model.11990_t
Valid prediction for GeneMark_model.11954_t
Couldn't classify 47785, 49074
Sorry, prediction pasa_asmbl_39017.p1 fails validation.
(GAT)	 CC	47785-49074	GG	GAG
Valid prediction for GeneMark_model.11980_t
Valid prediction for GlimmerHMM_glimmerT_7241-T1
Valid prediction for GlimmerHMM_glimmerT_7251-T1
Valid prediction for GeneMark_model.11939_t
Valid prediction for snap_scaffold_3-snap.1911-T1
Valid prediction for GeneMark_model.11992_t
Valid prediction for snap_scaffold_3-snap.1919-T1
Valid prediction for GeneMark_model.11996_t
Valid prediction for GlimmerHMM_glimmerT_7232-T1
Valid prediction for GeneMark_model.12001_t
Valid prediction for GlimmerHMM_glimmerT_7245-T1
Couldn't classify 45978, 46154
Couldn't classify 46796, 46819
Sorry, prediction pasa_asmbl_39664.p1 fails validation.
(GCC)	 TG	45978-46154	GT	CGG
(TTG)	 AG	46445-46570	GT	AGG
(ATT)	 AG	46796-46819	TC	GGT
-recovered pasa_asmbl_39664.p1, internal, 46445, 46570
Valid prediction for GlimmerHMM_glimmerT_7246-T1
Valid prediction for snap_scaffold_3-snap.1878-T1
Valid prediction for GeneMark_model.11961_t
Valid prediction for snap_scaffold_3-snap.1876-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.11968_t
Valid prediction for snap_scaffold_3-snap.1896-T1
Valid prediction for GeneMark_model.11971_t
Valid prediction for Augustus_model.g4758.t1
Valid prediction for GeneMark_model.11988_t
Couldn't classify 86425, 86488
Sorry, prediction pasa_asmbl_39010.p1 fails validation.
(CCA)	 GC	86425-86488	GT	AGG
(ACA)	 AG	86784-86933	GT	CAG
(GTT)	 AG	88243-88395	GT	AGG
(ATG)	 AG	88477-88586	GT	AGG
(GGG)	 AG	88892-89013	GT	AGG
(CTG)	 AG	89114-89198	GT	AGG
(GTA)	 AG	89308-89420	GT	AGG
(GTC)	 AG	89716-89863	GT	TGG
(CCG)	 AG	90537-90782	GG	GAG
add_exon() Sorry, pasa_asmbl_39010.p1 88477-88586-initial-1 is invalid.
-recovered pasa_asmbl_39010.p1, initial, 88477, 88586
-recovered pasa_asmbl_39010.p1, terminal, 90537, 90782
-recovered pasa_asmbl_39010.p1, internal, 86784, 86933
-recovered pasa_asmbl_39010.p1, internal, 88243, 88395
-recovered pasa_asmbl_39010.p1, internal, 88477, 88586
-recovered pasa_asmbl_39010.p1, internal, 88892, 89013
-recovered pasa_asmbl_39010.p1, internal, 89114, 89198
-recovered pasa_asmbl_39010.p1, internal, 89308, 89420
-recovered pasa_asmbl_39010.p1, internal, 89716, 89863
Valid prediction for GeneMark_model.11946_t
Valid prediction for snap_scaffold_3-snap.1885-T1
Valid prediction for Augustus_model.g4746.t1
Valid prediction for GeneMark_model.12006_t
Valid prediction for GeneMark_model.11932_t
Valid prediction for GeneMark_model.11952_t
Valid prediction for snap_scaffold_3-snap.1890-T1
Valid prediction for Augustus_model.g4750.t1
Valid prediction for GeneMark_model.11999_t
Valid prediction for GeneMark_model.11987_t
Valid prediction for GeneMark_model.11995_t
Valid prediction for GlimmerHMM_glimmerT_7255-T1
Valid prediction for snap_scaffold_3-snap.1888-T1
Valid prediction for Augustus_model.g4747.t1
Valid prediction for snap_scaffold_3-snap.1920-T1
Valid prediction for GeneMark_model.11934_t
Valid prediction for GlimmerHMM_glimmerT_7237-T1
Valid prediction for GeneMark_model.11938_t
Valid prediction for GlimmerHMM_glimmerT_7236-T1
Valid prediction for GeneMark_model.11985_t
Valid prediction for GeneMark_model.11977_t
Valid prediction for Augustus_model.g4741.t1
Valid prediction for Augustus_model.g4735.t1
Valid prediction for snap_scaffold_3-snap.1893-T1
Valid prediction for GlimmerHMM_glimmerT_7228-T1
Couldn't classify 6257, 6679
Couldn't classify 8394, 8813
Sorry, prediction pasa_asmbl_39020.p1 fails validation.
(GCC)	 GG	6257-6679	GT	AAG
(GTG)	 AG	7546-7694	GT	AGG
(GAA)	 AG	8029-8269	GT	AGG
(GCC)	 AG	8394-8813	CA	AGC
-recovered pasa_asmbl_39020.p1, internal, 7546, 7694
-recovered pasa_asmbl_39020.p1, internal, 8029, 8269
Valid prediction for GlimmerHMM_glimmerT_7223-T1
Valid prediction for snap_scaffold_3-snap.1895-T1
Valid prediction for Augustus_model.g4745.t1
Valid prediction for snap_scaffold_3-snap.1871-T1
Valid prediction for Augustus_model.g4751.t1
Valid prediction for snap_scaffold_3-snap.1905-T1
Couldn't classify 67971, 68083
Sorry, prediction pasa_asmbl_39713.p1 fails validation.
(ATG)	 TC	63680-63941	GT	AGG
(GCA)	 AG	65648-67720	GT	AGG
(GCA)	 AG	67971-68083	GG	ACG
-recovered pasa_asmbl_39713.p1, initial, 63680, 63941
-recovered pasa_asmbl_39713.p1, internal, 65648, 67720
Valid prediction for snap_scaffold_3-snap.1908-T1
Valid prediction for GlimmerHMM_glimmerT_7219-T1
Valid prediction for GlimmerHMM_glimmerT_7231-T1
Valid prediction for GlimmerHMM_glimmerT_7227-T1
Valid prediction for GeneMark_model.11950_t
Valid prediction for snap_scaffold_3-snap.1882-T1
Valid prediction for GlimmerHMM_glimmerT_7240-T1
Valid prediction for Augustus_model.g4757.t1
Valid prediction for GlimmerHMM_glimmerT_7247-T1
Valid prediction for GeneMark_model.12007_t
Valid prediction for snap_scaffold_3-snap.1912-T1
Valid prediction for snap_scaffold_3-snap.1904-T1
Valid prediction for GeneMark_model.11948_t
Valid prediction for snap_scaffold_3-snap.1880-T1
Valid prediction for GlimmerHMM_glimmerT_7248-T1
Valid prediction for snap_scaffold_3-snap.1913-T1
Valid prediction for snap_scaffold_3-snap.1915-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_3-snap.1898-T1
Valid prediction for Augustus_model.g4756.t1
Valid prediction for Augustus_model.g4738.t1
Valid prediction for GeneMark_model.11997_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8940, rend_intergenic: 3069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23206, rend_intergenic: 21090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32021, rend_intergenic: 28369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37699, rend_intergenic: 34125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51692, rend_intergenic: 41735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57563, rend_intergenic: 53382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100410, rend_intergenic: 97725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101398, rend_intergenic: 101039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111011, rend_intergenic: 102771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112379, rend_intergenic: 112327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129375, rend_intergenic: 118798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161920, rend_intergenic: 157918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193518, rend_intergenic: 188935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214798, rend_intergenic: 202399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 226898
-exon list size: 903


building trellis

0.1    
0.2    
0.3    
0.4    
0.6    
0.7    
0.8    
0.9    
1.0    
1.1    
1.2    
1.3    
1.4    
1.5    
1.7    
1.8    
1.9    
2.0    
2.1    
2.2    
2.3    
2.4    
2.5    
2.7    
2.8    
2.9    
3.0    
3.1    
3.2    
3.3    
3.4    
3.5    
3.6    
3.8    
3.9    
4.0    
4.1    
4.2    
4.3    
4.4    
4.5    
4.6    
4.8    
4.9    
5.0    
5.1    
5.2    
5.3    
5.4    
5.5    
5.6    
5.7    
5.9    
6.0    
6.1    
6.2    
6.3    
6.4    
6.5    
6.6    
6.7    
6.9    
7.0    
7.1    
7.2    
7.3    
7.4    
7.5    
7.6    
7.7    
7.8    
8.0    
8.1    
8.2    
8.3    
8.4    
8.5    
8.6    
8.7    
8.8    
9.0    
9.1    
9.2    
9.3    
9.4    
9.5    
9.6    
9.7    
9.8    
9.9    
10.1    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.8    
10.9    
11.0    
11.2    
11.3    
11.4    
11.5    
11.6    
11.7    
11.8    
11.9    
12.0    
12.2    
12.3    
12.4    
12.5    
12.6    
12.7    
12.8    
12.9    
13.0    
13.1    
13.3    
13.4    
13.5    
13.6    
13.7    
13.8    
13.9    
14.0    
14.1    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
14.9    
15.0    
15.1    
15.2    
15.4    
15.5    
15.6    
15.7    
15.8    
15.9    
16.0    
16.1    
16.2    
16.4    
16.5    
16.6    
16.7    
16.8    
16.9    
17.0    
17.1    
17.2    
17.3    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.1    
19.2    
19.3    
19.4    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.7    
21.8    
21.9    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.6    
99.7    
99.8    
99.9    
-found 48 predictions from path traversal
Error with prediction: snap lend_intergenic: 8940, rend_intergenic: 3069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23206, rend_intergenic: 21090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32021, rend_intergenic: 28369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37699, rend_intergenic: 34125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51692, rend_intergenic: 41735  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57563, rend_intergenic: 53382  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100410, rend_intergenic: 97725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101398, rend_intergenic: 101039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 111011, rend_intergenic: 102771  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112379, rend_intergenic: 112327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129375, rend_intergenic: 118798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161920, rend_intergenic: 157918  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 193518, rend_intergenic: 188935  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214798, rend_intergenic: 202399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 32 predictions persist after filtering for low support