-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_9370321-9445765

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.11917_t
Valid prediction for GeneMark_model.11930_t
Valid prediction for Augustus_model.g4734.t1
Valid prediction for GlimmerHMM_glimmerT_7212-T1
Valid prediction for GeneMark_model.11921_t
Valid prediction for snap_scaffold_3-snap.1855-T1
Valid prediction for snap_scaffold_3-snap.1864-T1
Valid prediction for snap_scaffold_3-snap.1857-T1
Valid prediction for GeneMark_model.11908_t
Valid prediction for Augustus_model.g4732.t1
Valid prediction for GeneMark_model.11919_t
Valid prediction for GeneMark_model.11924_t
Valid prediction for GlimmerHMM_glimmerT_7213-T1
Valid prediction for Augustus_model.g4730.t1
Valid prediction for snap_scaffold_3-snap.1861-T1
Valid prediction for GlimmerHMM_glimmerT_7214-T1
Valid prediction for GlimmerHMM_glimmerT_7217-T1
Valid prediction for GeneMark_model.11913_t
Valid prediction for GeneMark_model.11911_t
Valid prediction for GeneMark_model.11926_t
Valid prediction for Augustus_model.g4731.t1
Valid prediction for snap_scaffold_3-snap.1869-T1
Valid prediction for snap_scaffold_3-snap.1854-T1
Valid prediction for Augustus_model.g4728.t1
Valid prediction for GlimmerHMM_glimmerT_7211-T1
Valid prediction for GeneMark_model.11931_t
Valid prediction for GlimmerHMM_glimmerT_7218-T1
Valid prediction for snap_scaffold_3-snap.1859-T1
Valid prediction for snap_scaffold_3-snap.1867-T1
Valid prediction for GeneMark_model.11915_t
Valid prediction for Augustus_model.g4727.t1
Valid prediction for snap_scaffold_3-snap.1868-T1
Valid prediction for Augustus_model.g4726.t1
Valid prediction for GlimmerHMM_glimmerT_7210-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_7216-T1
Valid prediction for snap_scaffold_3-snap.1862-T1
Valid prediction for GlimmerHMM_glimmerT_7209-T1
Valid prediction for snap_scaffold_3-snap.1856-T1
Valid prediction for GeneMark_model.11914_t
Valid prediction for GeneMark_model.11928_t
Valid prediction for GeneMark_model.11916_t
Valid prediction for Augustus_model.g4733.t1
Valid prediction for GeneMark_model.11925_t
Valid prediction for snap_scaffold_3-snap.1860-T1
Valid prediction for GeneMark_model.11909_t
Valid prediction for snap_scaffold_3-snap.1870-T1
Valid prediction for GeneMark_model.11912_t
Valid prediction for GeneMark_model.11927_t
Valid prediction for GeneMark_model.11910_t
Valid prediction for GlimmerHMM_glimmerT_7215-T1
Valid prediction for GeneMark_model.11923_t
Valid prediction for GeneMark_model.11920_t
Valid prediction for snap_scaffold_3-snap.1865-T1
Valid prediction for GeneMark_model.11918_t
Valid prediction for GeneMark_model.11929_t
Valid prediction for GeneMark_model.11922_t
Valid prediction for Augustus_model.g4729.t1
Valid prediction for snap_scaffold_3-snap.1858-T1
Valid prediction for snap_scaffold_3-snap.1866-T1
Valid prediction for snap_scaffold_3-snap.1863-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13732, rend_intergenic: 10538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18134, rend_intergenic: 15527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22713, rend_intergenic: 20554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24156, rend_intergenic: 23157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39160, rend_intergenic: 25479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45839, rend_intergenic: 43325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50166, rend_intergenic: 46852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68121, rend_intergenic: 61572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 75445
-exon list size: 298


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.7    
3.0    
3.3    
3.7    
4.0    
4.3    
4.7    
5.0    
5.3    
5.7    
6.0    
6.3    
6.7    
7.0    
7.3    
7.7    
8.0    
8.3    
8.7    
9.0    
9.3    
9.7    
10.0    
10.3    
10.7    
11.0    
11.3    
11.7    
12.0    
12.3    
12.7    
13.0    
13.3    
13.7    
14.0    
14.3    
14.7    
15.0    
15.3    
15.7    
16.0    
16.3    
16.7    
17.0    
17.3    
17.7    
18.0    
18.3    
18.7    
19.0    
19.3    
19.7    
20.0    
20.3    
20.7    
21.0    
21.3    
21.7    
22.0    
22.3    
22.7    
23.0    
23.3    
23.7    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.3    
26.7    
27.0    
27.3    
27.7    
28.0    
28.3    
28.7    
29.0    
29.3    
29.7    
30.0    
30.3    
30.7    
31.0    
31.3    
31.7    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.7    
35.0    
35.3    
35.7    
36.0    
36.3    
36.7    
37.0    
37.3    
37.7    
38.0    
38.3    
38.7    
39.0    
39.3    
39.7    
40.0    
40.3    
40.7    
41.0    
41.3    
41.7    
42.0    
42.3    
42.7    
43.0    
43.3    
43.7    
44.0    
44.3    
44.7    
45.0    
45.3    
45.7    
46.0    
46.3    
46.7    
47.0    
47.3    
47.7    
48.0    
48.3    
48.7    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.3    
51.7    
52.0    
52.3    
52.7    
53.0    
53.3    
53.7    
54.0    
54.3    
54.7    
55.0    
55.3    
55.7    
56.0    
56.3    
56.7    
57.0    
57.3    
57.7    
58.0    
58.3    
58.7    
59.0    
59.3    
59.7    
60.0    
60.3    
60.7    
61.0    
61.3    
61.7    
62.0    
62.3    
62.7    
63.0    
63.3    
63.7    
64.0    
64.3    
64.7    
65.0    
65.3    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.3    
68.7    
69.0    
69.3    
69.7    
70.0    
70.3    
70.7    
71.0    
71.3    
71.7    
72.0    
72.3    
72.7    
73.0    
73.3    
73.7    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.3    
76.7    
77.0    
77.3    
77.7    
78.0    
78.3    
78.7    
79.0    
79.3    
79.7    
80.0    
80.3    
80.7    
81.0    
81.3    
81.7    
82.0    
82.3    
82.7    
83.0    
83.3    
83.7    
84.0    
84.3    
84.7    
85.0    
85.3    
85.7    
86.0    
86.3    
86.7    
87.0    
87.3    
87.7    
88.0    
88.3    
88.7    
89.0    
89.3    
89.7    
90.0    
90.3    
90.7    
91.0    
91.3    
91.7    
92.0    
92.3    
92.7    
93.0    
93.3    
93.7    
94.0    
94.3    
94.7    
95.0    
95.3    
95.7    
96.0    
96.3    
96.7    
97.0    
97.3    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 13 predictions from path traversal
Error with prediction: snap lend_intergenic: 13732, rend_intergenic: 10538  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18134, rend_intergenic: 15527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22713, rend_intergenic: 20554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24156, rend_intergenic: 23157  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39160, rend_intergenic: 25479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45839, rend_intergenic: 43325  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50166, rend_intergenic: 46852  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68121, rend_intergenic: 61572  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support