-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_7885979-8119705

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3-snap.1648-T1
Valid prediction for snap_scaffold_3-snap.1658-T1
Valid prediction for GeneMark_model.11667_t
Valid prediction for GlimmerHMM_glimmerT_7053-T1
Valid prediction for snap_scaffold_3-snap.1636-T1
Valid prediction for GlimmerHMM_glimmerT_7031-T1
Valid prediction for snap_scaffold_3-snap.1657-T1
Couldn't classify 201641, 201711
Sorry, prediction pasa_asmbl_40154.p1 fails validation.
(AGC)	 AC	201641-201711	GT	AGG
(GTT)	 AG	202577-202863	GT	TGG
(AAG)	 AG	204384-204449	GT	CAG
(GTT)	 AG	204860-204928	GT	AGG
(GAA)	 AG	205180-205349	GT	AGG
(GTG)	 AG	205734-205835	GT	AGG
(GTG)	 AG	206229-206459	CA	GAC
-recovered pasa_asmbl_40154.p1, terminal, 206229, 206459
-recovered pasa_asmbl_40154.p1, internal, 202577, 202863
-recovered pasa_asmbl_40154.p1, internal, 204384, 204449
-recovered pasa_asmbl_40154.p1, internal, 204860, 204928
-recovered pasa_asmbl_40154.p1, internal, 205180, 205349
-recovered pasa_asmbl_40154.p1, internal, 205734, 205835
Valid prediction for Augustus_model.g4637.t1
Valid prediction for GeneMark_model.11668_t
Couldn't classify 16776, 16795
Sorry, prediction pasa_asmbl_40141.p1 fails validation.
(CCT)	 CT	16776-16795	GT	AGG
(TGA)	 AG	16873-16951	GT	AGG
(GAT)	 AG	17109-17315	TC	GAT
-recovered pasa_asmbl_40141.p1, terminal, 17109, 17315
-recovered pasa_asmbl_40141.p1, internal, 16873, 16951
Valid prediction for GeneMark_model.11677_t
Valid prediction for Augustus_model.g4631.t1
Valid prediction for snap_scaffold_3-snap.1619-T1
Valid prediction for snap_scaffold_3-snap.1626-T1
Valid prediction for GeneMark_model.11639_t
Valid prediction for snap_scaffold_3-snap.1624-T1
Couldn't classify 158666, 158751
Sorry, prediction pasa_asmbl_40150.p1 fails validation.
(ATG)	 GG	150747-150813	GT	GTG
(ATT)	 AG	153467-153543	GT	AGG
(CCC)	 AG	155995-156145	GT	GGG
(GGA)	 AG	158231-158491	GT	AGG
(AGA)	 AG	158666-158751	AT	ACA
-recovered pasa_asmbl_40150.p1, initial, 150747, 150813
-recovered pasa_asmbl_40150.p1, internal, 153467, 153543
-recovered pasa_asmbl_40150.p1, internal, 155995, 156145
-recovered pasa_asmbl_40150.p1, internal, 158231, 158491
Valid prediction for GlimmerHMM_glimmerT_7034-T1
Valid prediction for GeneMark_model.11649_t
Valid prediction for GeneMark_model.11676_t
Valid prediction for GeneMark_model.11656_t
Valid prediction for GlimmerHMM_glimmerT_7052-T1
Valid prediction for snap_scaffold_3-snap.1659-T1
Valid prediction for GlimmerHMM_glimmerT_7056-T1
Valid prediction for snap_scaffold_3-snap.1639-T1
Valid prediction for Augustus_model.g4620.t1
Valid prediction for GlimmerHMM_glimmerT_7027-T1
Valid prediction for GeneMark_model.11652_t
Valid prediction for snap_scaffold_3-snap.1637-T1
Couldn't classify 231518, 231946
Sorry, prediction pasa_asmbl_40157.p1 fails validation.
(GTG)	 AG	231518-231946	GG	CAG
Valid prediction for GlimmerHMM_glimmerT_7038-T1
Valid prediction for GlimmerHMM_glimmerT_7050-T1
Valid prediction for GeneMark_model.11657_t
Valid prediction for snap_scaffold_3-snap.1650-T1
Valid prediction for pasa_asmbl_40775.p1
Valid prediction for Augustus_model.g4632.t1
Valid prediction for snap_scaffold_3-snap.1638-T1
Valid prediction for GeneMark_model.11654_t
Valid prediction for GeneMark_model.11683_t
Valid prediction for GeneMark_model.11680_t
Valid prediction for snap_scaffold_3-snap.1625-T1
Valid prediction for GlimmerHMM_glimmerT_7033-T1
Valid prediction for GeneMark_model.11658_t
Valid prediction for Augustus_model.g4611.t1
Valid prediction for GeneMark_model.11646_t
Valid prediction for snap_scaffold_3-snap.1634-T1
Valid prediction for GlimmerHMM_glimmerT_7051-T1
Valid prediction for GeneMark_model.11643_t
Valid prediction for GeneMark_model.11659_t
Valid prediction for HiQ_model.g4636.t1
Valid prediction for GlimmerHMM_glimmerT_7039-T1
Valid prediction for GeneMark_model.11655_t
Valid prediction for Augustus_model.g4635.t1
Valid prediction for HiQ_model.g4614.t1
Valid prediction for snap_scaffold_3-snap.1654-T1
Valid prediction for GlimmerHMM_glimmerT_7035-T1
Valid prediction for GeneMark_model.11669_t
Valid prediction for GlimmerHMM_glimmerT_7049-T1
Valid prediction for GlimmerHMM_glimmerT_7055-T1
Valid prediction for CodingQuarry_transcript_46108-T1
Couldn't classify 201424, 201505
Sorry, prediction pasa_asmbl_40153.p1 fails validation.
(ATG)	 TC	197832-197879	GT	ATG
(CAG)	 AG	198049-198139	GT	AGG
(AGC)	 AG	198368-198415	GT	AGG
(CCC)	 AG	199181-199231	GT	CTG
(TGA)	 AG	201185-201308	GT	AGG
(TGC)	 AG	201424-201505	AC	ACA
-recovered pasa_asmbl_40153.p1, initial, 197832, 197879
-recovered pasa_asmbl_40153.p1, internal, 198049, 198139
-recovered pasa_asmbl_40153.p1, internal, 198368, 198415
-recovered pasa_asmbl_40153.p1, internal, 199181, 199231
-recovered pasa_asmbl_40153.p1, internal, 201185, 201308
Couldn't classify 37154, 37205
Sorry, prediction pasa_asmbl_40144.p1 fails validation.
(GAA)	 GC	37154-37205	GT	CGG
(AGC)	 AG	37532-37612	GT	AGG
(ACA)	 AG	38256-38428	GT	ATG
(GAT)	 AG	38647-38748	GT	AGG
(TAT)	 AG	38879-38993	GT	TGG
(GGG)	 AG	41389-41468	GT	AGG
(AAA)	 AG	41633-41830	GT	AGG
(ACT)	 AG	42008-42473	GT	AGG
(GTC)	 AG	42574-42695	GT	AGG
(GTA)	 AG	42793-42990	GT	TGG
(GTG)	 AG	43078-43179	GT	AGG
(GCT)	 AG	43289-43468	GT	AGG
(ATC)	 AG	43555-43641	GT	AGG
(GCT)	 AG	43906-44176	GT	CGG
(GTC)	 AG	44296-44441	GT	AGG
(GGT)	 AG	44558-44704	GT	AGG
(GTG)	 AG	44957-45082	GT	AGG
(CTG)	 AG	45190-45411	GT	AAG
(GAC)	 AG	45548-45730	GT	AGG
(GAG)	 AG	45825-46057	GT	AGG
(GGG)	 AG	46167-46298	GT	GGG
(CCC)	 AG	46414-46686	GT	AGG
(AGA)	 AG	46805-47021	GT	AGG
(GGT)	 AG	47145-47303	AA	GAA
-recovered pasa_asmbl_40144.p1, terminal, 47145, 47303
-recovered pasa_asmbl_40144.p1, internal, 37532, 37612
-recovered pasa_asmbl_40144.p1, internal, 38256, 38428
-recovered pasa_asmbl_40144.p1, internal, 38647, 38748
-recovered pasa_asmbl_40144.p1, internal, 38879, 38993
-recovered pasa_asmbl_40144.p1, internal, 41389, 41468
-recovered pasa_asmbl_40144.p1, internal, 41633, 41830
-recovered pasa_asmbl_40144.p1, internal, 42008, 42473
-recovered pasa_asmbl_40144.p1, internal, 42574, 42695
-recovered pasa_asmbl_40144.p1, internal, 42793, 42990
-recovered pasa_asmbl_40144.p1, internal, 43078, 43179
-recovered pasa_asmbl_40144.p1, internal, 43289, 43468
-recovered pasa_asmbl_40144.p1, internal, 43555, 43641
-recovered pasa_asmbl_40144.p1, internal, 43906, 44176
-recovered pasa_asmbl_40144.p1, internal, 44296, 44441
-recovered pasa_asmbl_40144.p1, internal, 44558, 44704
-recovered pasa_asmbl_40144.p1, internal, 44957, 45082
-recovered pasa_asmbl_40144.p1, internal, 45190, 45411
-recovered pasa_asmbl_40144.p1, internal, 45548, 45730
-recovered pasa_asmbl_40144.p1, internal, 45825, 46057
-recovered pasa_asmbl_40144.p1, internal, 46167, 46298
-recovered pasa_asmbl_40144.p1, internal, 46414, 46686
-recovered pasa_asmbl_40144.p1, internal, 46805, 47021
Valid prediction for Augustus_model.g4622.t1
Valid prediction for GlimmerHMM_glimmerT_7026-T1
Valid prediction for snap_scaffold_3-snap.1649-T1
Couldn't classify 14721, 14874
Couldn't classify 15354, 15559
Sorry, prediction pasa_asmbl_40840.p1 fails validation.
(GTG)	 GG	14721-14874	GT	CGG
(ACC)	 AG	15354-15559	GA	GGG
Valid prediction for GlimmerHMM_glimmerT_7057-T1
Valid prediction for GlimmerHMM_glimmerT_7058-T1
Valid prediction for Augustus_model.g4619.t1
Valid prediction for snap_scaffold_3-snap.1627-T1
Valid prediction for Augustus_model.g4610.t1
Valid prediction for snap_scaffold_3-snap.1622-T1
Valid prediction for GeneMark_model.11644_t
Valid prediction for GlimmerHMM_glimmerT_7040-T1
Valid prediction for GeneMark_model.11648_t
Valid prediction for Augustus_model.g4630.t1
Valid prediction for Augustus_model.g4638.t1
Couldn't classify 226940, 227074
Sorry, prediction pasa_asmbl_40156.p1 fails validation.
(ATG)	 TC	219693-219783	GT	AGG
(GTC)	 AG	220118-220203	GT	AAG
(GAA)	 AG	220602-220809	GT	AGG
(GGG)	 AG	220929-221178	GT	GGG
(ATA)	 AG	222057-222225	GT	AGG
(GAG)	 AG	223510-223671	GT	TGG
(GAC)	 AG	225058-225153	GT	AGG
(AAT)	 AG	225241-225330	GT	ATG
(AAC)	 AG	226940-227074	GT	CGG
-recovered pasa_asmbl_40156.p1, initial, 219693, 219783
-recovered pasa_asmbl_40156.p1, internal, 220118, 220203
-recovered pasa_asmbl_40156.p1, internal, 220602, 220809
-recovered pasa_asmbl_40156.p1, internal, 220929, 221178
-recovered pasa_asmbl_40156.p1, internal, 222057, 222225
-recovered pasa_asmbl_40156.p1, internal, 223510, 223671
-recovered pasa_asmbl_40156.p1, internal, 225058, 225153
-recovered pasa_asmbl_40156.p1, internal, 225241, 225330
-recovered pasa_asmbl_40156.p1, internal, 226940, 227074
Valid prediction for GeneMark_model.11673_t
Valid prediction for snap_scaffold_3-snap.1635-T1
Valid prediction for snap_scaffold_3-snap.1656-T1
Valid prediction for snap_scaffold_3-snap.1647-T1
Valid prediction for Augustus_model.g4616.t1
Valid prediction for CodingQuarry_transcript_46110-T1
Valid prediction for snap_scaffold_3-snap.1651-T1
Valid prediction for GeneMark_model.11671_t
Valid prediction for GeneMark_model.11681_t
Valid prediction for GeneMark_model.11637_t
Valid prediction for GeneMark_model.11641_t
Couldn't classify 83355, 83391
Sorry, prediction pasa_asmbl_40147.p1 fails validation.
(GCG)	 GC	83355-83391	GT	CAG
(ATA)	 AG	83483-83658	GT	TGG
(GTC)	 AG	83744-83821	GT	ATG
(GAT)	 AG	83938-84005	GT	AGG
(GGA)	 AG	84218-84366	GT	AGG
(ACA)	 AG	84529-86709	GT	AGG
(CAG)	 AG	86793-86904	GT	TGG
(CAA)	 AG	86999-87110	CT	AAC
-recovered pasa_asmbl_40147.p1, terminal, 86999, 87110
-recovered pasa_asmbl_40147.p1, internal, 83483, 83658
-recovered pasa_asmbl_40147.p1, internal, 83744, 83821
-recovered pasa_asmbl_40147.p1, internal, 83938, 84005
-recovered pasa_asmbl_40147.p1, internal, 84218, 84366
-recovered pasa_asmbl_40147.p1, internal, 84529, 86709
-recovered pasa_asmbl_40147.p1, internal, 86793, 86904
Valid prediction for snap_scaffold_3-snap.1633-T1
Valid prediction for CodingQuarry_transcript_46111-T1
Valid prediction for HiQ_model.g4618.t1
Valid prediction for Augustus_model.g4634.t1
Valid prediction for Augustus_model.g4621.t1
Valid prediction for GlimmerHMM_glimmerT_7028-T1
Valid prediction for GlimmerHMM_glimmerT_7041-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g4629.t1
Valid prediction for GlimmerHMM_glimmerT_7048-T1
Valid prediction for snap_scaffold_3-snap.1646-T1
Valid prediction for snap_scaffold_3-snap.1630-T1
Valid prediction for GeneMark_model.11664_t
Valid prediction for GeneMark_model.11638_t
Valid prediction for GeneMark_model.11666_t
Valid prediction for Augustus_model.g4633.t1
Valid prediction for Augustus_model.g4626.t1
Valid prediction for Augustus_model.g4624.t1
Valid prediction for GeneMark_model.11651_t
Valid prediction for GeneMark_model.11672_t
Valid prediction for HiQ_model.g4615.t1
Valid prediction for GeneMark_model.11662_t
Valid prediction for snap_scaffold_3-snap.1655-T1
Valid prediction for Augustus_model.g4628.t1
Valid prediction for GeneMark_model.11675_t
Valid prediction for snap_scaffold_3-snap.1644-T1
Valid prediction for GlimmerHMM_glimmerT_7045-T1
Valid prediction for snap_scaffold_3-snap.1643-T1
Valid prediction for GlimmerHMM_glimmerT_7032-T1
Valid prediction for GeneMark_model.11647_t
Couldn't classify 211724, 211804
Sorry, prediction pasa_asmbl_38945.p1 fails validation.
(GCA)	 AA	211724-211804	GT	AGG
(GAT)	 AG	212536-212598	GT	AGG
(TAT)	 AG	212857-212957	GT	AGG
(GCA)	 AG	213074-213116	GT	AGG
(AGT)	 AG	213255-213341	GT	AGG
(TGT)	 AG	213457-213536	GT	AGG
(GGT)	 AG	213718-213829	GT	AGG
(AAC)	 AG	214075-214206	GC	GAG
-recovered pasa_asmbl_38945.p1, terminal, 214075, 214206
-recovered pasa_asmbl_38945.p1, internal, 212536, 212598
-recovered pasa_asmbl_38945.p1, internal, 212857, 212957
-recovered pasa_asmbl_38945.p1, internal, 213074, 213116
-recovered pasa_asmbl_38945.p1, internal, 213255, 213341
-recovered pasa_asmbl_38945.p1, internal, 213457, 213536
-recovered pasa_asmbl_38945.p1, internal, 213718, 213829
-recovered pasa_asmbl_38945.p1, internal, 214075, 214206
Valid prediction for GlimmerHMM_glimmerT_7042-T1
Valid prediction for GlimmerHMM_glimmerT_7044-T1
Valid prediction for GlimmerHMM_glimmerT_7054-T1
Valid prediction for GeneMark_model.11660_t
Valid prediction for snap_scaffold_3-snap.1618-T1
Valid prediction for HiQ_model.g4613.t1
Valid prediction for GeneMark_model.11678_t
Couldn't classify 197206, 197324
Sorry, prediction pasa_asmbl_38950.p1 fails validation.
(AAT)	 TA	197206-197324	GT	AGG
(GTA)	 AG	199159-199311	GT	GGG
(GTT)	 AG	199978-200170	GT	AGG
(GCG)	 AG	200375-200476	GT	CTG
(ATC)	 AG	200707-200874	TG	AGT
-recovered pasa_asmbl_38950.p1, terminal, 200707, 200874
-recovered pasa_asmbl_38950.p1, internal, 199159, 199311
-recovered pasa_asmbl_38950.p1, internal, 199978, 200170
-recovered pasa_asmbl_38950.p1, internal, 200375, 200476
Valid prediction for snap_scaffold_3-snap.1623-T1
Couldn't classify 156059, 156274
Sorry, prediction pasa_asmbl_39653.p1 fails validation.
(ATG)	 AC	153336-153516	GT	AGG
(AAG)	 AG	154374-154535	GT	AGG
(TGG)	 AG	155280-155291	GT	AGG
(ATG)	 AG	155777-155886	GT	AGG
(GAC)	 AG	156059-156274	GC	AGG
-recovered pasa_asmbl_39653.p1, initial, 153336, 153516
add_exon() Sorry, pasa_asmbl_39653.p1 155777-155886-initial-1 is invalid.
-recovered pasa_asmbl_39653.p1, initial, 155777, 155886
-recovered pasa_asmbl_39653.p1, internal, 154374, 154535
-recovered pasa_asmbl_39653.p1, internal, 155280, 155291
-recovered pasa_asmbl_39653.p1, internal, 155777, 155886
-recovered pasa_asmbl_39653.p1, internal, 156059, 156274
Valid prediction for GeneMark_model.11642_t
Valid prediction for GeneMark_model.11663_t
Couldn't classify 154374, 154540
Couldn't classify 155770, 155839
Sorry, prediction CodingQuarry_transcript_46109-T1 fails validation.
(ATG)	 GG	153457-153516	GT	AGG
(AAG)	 AG	154374-154540	AC	ACA
(TGT)	 GC	155770-155839	GG	GAG
-recovered CodingQuarry_transcript_46109-T1, initial, 153457, 153516
Valid prediction for snap_scaffold_3-snap.1645-T1
Valid prediction for GeneMark_model.11650_t
Valid prediction for GeneMark_model.11679_t
Couldn't classify 158075, 158133
Sorry, prediction pasa_asmbl_38959.p1 fails validation.
(CTT)	 GT	158075-158133	GT	CGG
(GTC)	 AG	158225-158369	GT	TGG
(GAC)	 AG	158467-158624	GT	AGG
(GGC)	 AG	158762-158873	GT	AGG
(AAC)	 AG	158969-159116	GT	CAG
(ACT)	 AG	159355-159522	GT	AGG
(CGT)	 AG	159711-159776	GT	AGG
(AGT)	 AG	159950-160079	GT	CTG
(TTC)	 AG	160411-160591	GT	AGG
(ATT)	 AG	160675-160749	GT	AGG
(ATG)	 AG	160847-160954	GT	AGG
(GAA)	 AG	161087-161227	GT	CGG
(CAA)	 AG	161319-161445	GT	TGG
(ACA)	 AG	161595-162496	GT	AGG
(GTC)	 AG	162646-163032	GT	AGG
(CTG)	 AG	163488-163588	GT	TGG
(GAT)	 AG	163696-163767	GT	AGG
(GCC)	 AG	163878-164049	GT	AGG
(GTG)	 AG	164178-164356	GT	AGG
(CTA)	 AG	164482-164595	GT	AAG
(AGT)	 AG	164708-164816	GT	ATG
(ATG)	 AG	164940-165094	GT	AGG
(GCT)	 AG	165226-165316	GT	AGG
(ACA)	 AG	165464-165524	GT	AGG
(AGG)	 AG	165623-165757	GT	GGG
(ATG)	 AG	165864-165984	GT	TTG
(CGA)	 AG	166104-166199	GT	AGG
(TTG)	 AG	166331-166414	GT	CTG
(CTC)	 AG	166726-166817	GT	CAG
(AGG)	 AG	167007-167066	GT	GCG
(AGT)	 AG	167232-167408	GT	AGG
(ACG)	 AG	167626-167729	GT	AGG
(CGT)	 AG	167894-168284	GT	AGG
(ATT)	 AG	168389-168463	GT	AGG
(GGA)	 AG	168543-168658	CA	GAC
-recovered pasa_asmbl_38959.p1, initial, 160847, 160954
-recovered pasa_asmbl_38959.p1, initial, 164940, 165094
add_exon() Sorry, pasa_asmbl_38959.p1 165864-165984-initial-1 is invalid.
-recovered pasa_asmbl_38959.p1, initial, 165864, 165984
add_exon() Sorry, pasa_asmbl_38959.p1 167894-168284-terminal-3 is invalid.
-recovered pasa_asmbl_38959.p1, terminal, 167894, 168284
-recovered pasa_asmbl_38959.p1, terminal, 168543, 168658
-recovered pasa_asmbl_38959.p1, internal, 158225, 158369
-recovered pasa_asmbl_38959.p1, internal, 158467, 158624
-recovered pasa_asmbl_38959.p1, internal, 158762, 158873
-recovered pasa_asmbl_38959.p1, internal, 158969, 159116
-recovered pasa_asmbl_38959.p1, internal, 159355, 159522
-recovered pasa_asmbl_38959.p1, internal, 159711, 159776
-recovered pasa_asmbl_38959.p1, internal, 159950, 160079
-recovered pasa_asmbl_38959.p1, internal, 160411, 160591
-recovered pasa_asmbl_38959.p1, internal, 160675, 160749
-recovered pasa_asmbl_38959.p1, internal, 160847, 160954
-recovered pasa_asmbl_38959.p1, internal, 161087, 161227
-recovered pasa_asmbl_38959.p1, internal, 161319, 161445
-recovered pasa_asmbl_38959.p1, internal, 161595, 162496
-recovered pasa_asmbl_38959.p1, internal, 162646, 163032
-recovered pasa_asmbl_38959.p1, internal, 163488, 163588
-recovered pasa_asmbl_38959.p1, internal, 163696, 163767
-recovered pasa_asmbl_38959.p1, internal, 163878, 164049
-recovered pasa_asmbl_38959.p1, internal, 164178, 164356
-recovered pasa_asmbl_38959.p1, internal, 164482, 164595
-recovered pasa_asmbl_38959.p1, internal, 164708, 164816
-recovered pasa_asmbl_38959.p1, internal, 164940, 165094
-recovered pasa_asmbl_38959.p1, internal, 165226, 165316
-recovered pasa_asmbl_38959.p1, internal, 165464, 165524
-recovered pasa_asmbl_38959.p1, internal, 165623, 165757
-recovered pasa_asmbl_38959.p1, internal, 165864, 165984
-recovered pasa_asmbl_38959.p1, internal, 166104, 166199
-recovered pasa_asmbl_38959.p1, internal, 166331, 166414
-recovered pasa_asmbl_38959.p1, internal, 166726, 166817
-recovered pasa_asmbl_38959.p1, internal, 167007, 167066
-recovered pasa_asmbl_38959.p1, internal, 167232, 167408
-recovered pasa_asmbl_38959.p1, internal, 167626, 167729
-recovered pasa_asmbl_38959.p1, internal, 167894, 168284
-recovered pasa_asmbl_38959.p1, internal, 168389, 168463
Valid prediction for GeneMark_model.11661_t
Valid prediction for GeneMark_model.11682_t
Valid prediction for snap_scaffold_3-snap.1652-T1
Valid prediction for snap_scaffold_3-snap.1642-T1
Valid prediction for snap_scaffold_3-snap.1641-T1
Valid prediction for CodingQuarry_transcript_46106-T1
Valid prediction for snap_scaffold_3-snap.1653-T1
Valid prediction for GeneMark_model.11670_t
Valid prediction for snap_scaffold_3-snap.1631-T1
Valid prediction for snap_scaffold_3-snap.1620-T1
Valid prediction for CodingQuarry_transcript_46107-T1
Valid prediction for GlimmerHMM_glimmerT_7036-T1
Valid prediction for GlimmerHMM_glimmerT_7043-T1
Valid prediction for Augustus_model.g4623.t1
Valid prediction for snap_scaffold_3-snap.1629-T1
Valid prediction for GeneMark_model.11653_t
Valid prediction for snap_scaffold_3-snap.1628-T1
Valid prediction for GeneMark_model.11665_t
Valid prediction for Augustus_model.g4609.t1
Valid prediction for Augustus_model.g4625.t1
Valid prediction for pasa_asmbl_38947.p1
Valid prediction for GlimmerHMM_glimmerT_7046-T1
Valid prediction for GlimmerHMM_glimmerT_7037-T1
Valid prediction for snap_scaffold_3-snap.1632-T1
Valid prediction for Augustus_model.g4617.t1
Valid prediction for snap_scaffold_3-snap.1640-T1
Valid prediction for GlimmerHMM_glimmerT_7029-T1
Valid prediction for GeneMark_model.11674_t
Valid prediction for GlimmerHMM_glimmerT_7030-T1
Valid prediction for HiQ_model.g4612.t1
Valid prediction for GeneMark_model.11645_t
Valid prediction for Augustus_model.g4627.t1
Valid prediction for GlimmerHMM_glimmerT_7047-T1
Valid prediction for snap_scaffold_3-snap.1621-T1
Valid prediction for GeneMark_model.11636_t
Valid prediction for GeneMark_model.11640_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 62305, rend_intergenic: 51870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185137, rend_intergenic: 182355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189434, rend_intergenic: 185410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 233727
-exon list size: 699


building trellis

0.1    
0.3    
0.4    
0.6    
0.7    
0.9    
1.0    
1.1    
1.3    
1.4    
1.6    
1.7    
1.9    
2.0    
2.1    
2.3    
2.4    
2.6    
2.7    
2.9    
3.0    
3.1    
3.3    
3.4    
3.6    
3.7    
3.9    
4.0    
4.1    
4.3    
4.4    
4.6    
4.7    
4.9    
5.0    
5.1    
5.3    
5.4    
5.6    
5.7    
5.8    
6.0    
6.1    
6.3    
6.4    
6.6    
6.7    
6.8    
7.0    
7.1    
7.3    
7.4    
7.6    
7.7    
7.8    
8.0    
8.1    
8.3    
8.4    
8.6    
8.7    
8.8    
9.0    
9.1    
9.3    
9.4    
9.6    
9.7    
9.8    
10.0    
10.1    
10.3    
10.4    
10.6    
10.7    
10.8    
11.0    
11.1    
11.3    
11.4    
11.6    
11.7    
11.8    
12.0    
12.1    
12.3    
12.4    
12.6    
12.7    
12.8    
13.0    
13.1    
13.3    
13.4    
13.6    
13.7    
13.8    
14.0    
14.1    
14.3    
14.4    
14.6    
14.7    
14.8    
15.0    
15.1    
15.3    
15.4    
15.5    
15.7    
15.8    
16.0    
16.1    
16.3    
16.4    
16.5    
16.7    
16.8    
17.0    
17.1    
17.3    
17.4    
17.5    
17.7    
17.8    
18.0    
18.1    
18.3    
18.4    
18.5    
18.7    
18.8    
19.0    
19.1    
19.3    
19.4    
19.5    
19.7    
19.8    
20.0    
20.1    
20.3    
20.4    
20.5    
20.7    
20.8    
21.0    
21.1    
21.3    
21.4    
21.5    
21.7    
21.8    
22.0    
22.1    
22.3    
22.4    
22.5    
22.7    
22.8    
23.0    
23.1    
23.3    
23.4    
23.5    
23.7    
23.8    
24.0    
24.1    
24.3    
24.4    
24.5    
24.7    
24.8    
25.0    
25.1    
25.2    
25.4    
25.5    
25.7    
25.8    
26.0    
26.1    
26.2    
26.4    
26.5    
26.7    
26.8    
27.0    
27.1    
27.2    
27.4    
27.5    
27.7    
27.8    
28.0    
28.1    
28.2    
28.4    
28.5    
28.7    
28.8    
29.0    
29.1    
29.2    
29.4    
29.5    
29.7    
29.8    
30.0    
30.1    
30.2    
30.4    
30.5    
30.7    
30.8    
31.0    
31.1    
31.2    
31.4    
31.5    
31.7    
31.8    
32.0    
32.1    
32.2    
32.4    
32.5    
32.7    
32.8    
33.0    
33.1    
33.2    
33.4    
33.5    
33.7    
33.8    
34.0    
34.1    
34.2    
34.4    
34.5    
34.7    
34.8    
35.0    
35.1    
35.2    
35.4    
35.5    
35.7    
35.8    
35.9    
36.1    
36.2    
36.4    
36.5    
36.7    
36.8    
36.9    
37.1    
37.2    
37.4    
37.5    
37.7    
37.8    
37.9    
38.1    
38.2    
38.4    
38.5    
38.7    
38.8    
38.9    
39.1    
39.2    
39.4    
39.5    
39.7    
39.8    
39.9    
40.1    
40.2    
40.4    
40.5    
40.7    
40.8    
40.9    
41.1    
41.2    
41.4    
41.5    
41.7    
41.8    
41.9    
42.1    
42.2    
42.4    
42.5    
42.7    
42.8    
42.9    
43.1    
43.2    
43.4    
43.5    
43.7    
43.8    
43.9    
44.1    
44.2    
44.4    
44.5    
44.7    
44.8    
44.9    
45.1    
45.2    
45.4    
45.5    
45.6    
45.8    
45.9    
46.1    
46.2    
46.4    
46.5    
46.6    
46.8    
46.9    
47.1    
47.2    
47.4    
47.5    
47.6    
47.8    
47.9    
48.1    
48.2    
48.4    
48.5    
48.6    
48.8    
48.9    
49.1    
49.2    
49.4    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.6    
50.8    
50.9    
51.1    
51.2    
51.4    
51.5    
51.6    
51.8    
51.9    
52.1    
52.2    
52.4    
52.5    
52.6    
52.8    
52.9    
53.1    
53.2    
53.4    
53.5    
53.6    
53.8    
53.9    
54.1    
54.2    
54.4    
54.5    
54.6    
54.8    
54.9    
55.1    
55.2    
55.3    
55.5    
55.6    
55.8    
55.9    
56.1    
56.2    
56.3    
56.5    
56.6    
56.8    
56.9    
57.1    
57.2    
57.3    
57.5    
57.6    
57.8    
57.9    
58.1    
58.2    
58.3    
58.5    
58.6    
58.8    
58.9    
59.1    
59.2    
59.3    
59.5    
59.6    
59.8    
59.9    
60.1    
60.2    
60.3    
60.5    
60.6    
60.8    
60.9    
61.1    
61.2    
61.3    
61.5    
61.6    
61.8    
61.9    
62.1    
62.2    
62.3    
62.5    
62.6    
62.8    
62.9    
63.1    
63.2    
63.3    
63.5    
63.6    
63.8    
63.9    
64.1    
64.2    
64.3    
64.5    
64.6    
64.8    
64.9    
65.0    
65.2    
65.3    
65.5    
65.6    
65.8    
65.9    
66.0    
66.2    
66.3    
66.5    
66.6    
66.8    
66.9    
67.0    
67.2    
67.3    
67.5    
67.6    
67.8    
67.9    
68.0    
68.2    
68.3    
68.5    
68.6    
68.8    
68.9    
69.0    
69.2    
69.3    
69.5    
69.6    
69.8    
69.9    
70.0    
70.2    
70.3    
70.5    
70.6    
70.8    
70.9    
71.0    
71.2    
71.3    
71.5    
71.6    
71.8    
71.9    
72.0    
72.2    
72.3    
72.5    
72.6    
72.8    
72.9    
73.0    
73.2    
73.3    
73.5    
73.6    
73.8    
73.9    
74.0    
74.2    
74.3    
74.5    
74.6    
74.8    
74.9    
75.0    
75.2    
75.3    
75.5    
75.6    
75.7    
75.9    
76.0    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.2    
77.3    
77.5    
77.6    
77.7    
77.9    
78.0    
78.2    
78.3    
78.5    
78.6    
78.7    
78.9    
79.0    
79.2    
79.3    
79.5    
79.6    
79.7    
79.9    
80.0    
80.2    
80.3    
80.5    
80.6    
80.7    
80.9    
81.0    
81.2    
81.3    
81.5    
81.6    
81.7    
81.9    
82.0    
82.2    
82.3    
82.5    
82.6    
82.7    
82.9    
83.0    
83.2    
83.3    
83.5    
83.6    
83.7    
83.9    
84.0    
84.2    
84.3    
84.5    
84.6    
84.7    
84.9    
85.0    
85.2    
85.3    
85.4    
85.6    
85.7    
85.9    
86.0    
86.2    
86.3    
86.4    
86.6    
86.7    
86.9    
87.0    
87.2    
87.3    
87.4    
87.6    
87.7    
87.9    
88.0    
88.2    
88.3    
88.4    
88.6    
88.7    
88.9    
89.0    
89.2    
89.3    
89.4    
89.6    
89.7    
89.9    
90.0    
90.2    
90.3    
90.4    
90.6    
90.7    
90.9    
91.0    
91.2    
91.3    
91.4    
91.6    
91.7    
91.9    
92.0    
92.2    
92.3    
92.4    
92.6    
92.7    
92.9    
93.0    
93.2    
93.3    
93.4    
93.6    
93.7    
93.9    
94.0    
94.2    
94.3    
94.4    
94.6    
94.7    
94.9    
95.0    
95.1    
95.3    
95.4    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.6    
96.7    
96.9    
97.0    
97.1    
97.3    
97.4    
97.6    
97.7    
97.9    
98.0    
98.1    
98.3    
98.4    
98.6    
98.7    
98.9    
99.0    
99.1    
99.3    
99.4    
99.6    
99.7    
99.9    
-found 37 predictions from path traversal
Error with prediction: snap lend_intergenic: 62305, rend_intergenic: 51870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 185137, rend_intergenic: 182355  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189434, rend_intergenic: 185410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 34 predictions persist after filtering for low support