-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_6655695-6852522 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3-snap.1367-T1 Valid prediction for Augustus_model.g4493.t1 Valid prediction for GlimmerHMM_glimmerT_6857-T1 Couldn't classify 173343, 174572 Sorry, prediction Augustus_model.g4495.t1 fails validation. (TCG) AC 173343-174572 GT TGG (CAT) AG 174761-174923 GT AGG (GCT) AG 175009-175105 GT AGG (GTG) AG 175274-175351 GT AGG (ATC) AG 175451-175666 GT ACG (ATG) AG 175779-175950 GT AGG (AGA) AG 176215-176407 GT GAG (ATA) AG 176623-176688 GT GTG (GGA) AG 176832-176991 GT TGG (AAC) AG 177267-177398 GT CGG (GAC) AG 177686-177814 GT AGG (GGC) AG 177994-178017 GT TTG (GCC) AG 178433-178510 GT AAG (TTC) AG 179311-179381 GT CTG (GTA) AG 179578-179644 GT AGG (GCT) AG 179754-179932 GT AGG (CTA) AG 180273-180371 GT AGG (GTA) AG 180546-180710 GT AAG (AGG) AG 180860-180971 GT CAG (GGC) AG 181066-181143 GT AGG (GGT) AG 181309-181445 GT CTG (TAA) AG 181549-181704 GT AGG (TCC) AG 181791-181908 GT AGG (GCG) AG 182048-182205 GT AGG (GTT) AG 182319-182441 GT GGG (CTG) AG 182562-182738 GT GAG (GAG) AG 182833-182878 GT AGG (GTC) AG 183280-183341 GT AGG (TAC) AG 183421-183570 GT AGG (GAT) AG 184067-184163 GT AGG (GCT) AG 184359-184397 TG AAT -recovered Augustus_model.g4495.t1, initial, 175779, 175950 -recovered Augustus_model.g4495.t1, terminal, 184359, 184397 -recovered Augustus_model.g4495.t1, internal, 174761, 174923 -recovered Augustus_model.g4495.t1, internal, 175009, 175105 -recovered Augustus_model.g4495.t1, internal, 175274, 175351 -recovered Augustus_model.g4495.t1, internal, 175451, 175666 -recovered Augustus_model.g4495.t1, internal, 175779, 175950 -recovered Augustus_model.g4495.t1, internal, 176215, 176407 -recovered Augustus_model.g4495.t1, internal, 176623, 176688 -recovered Augustus_model.g4495.t1, internal, 176832, 176991 -recovered Augustus_model.g4495.t1, internal, 177267, 177398 -recovered Augustus_model.g4495.t1, internal, 177686, 177814 -recovered Augustus_model.g4495.t1, internal, 177994, 178017 -recovered Augustus_model.g4495.t1, internal, 178433, 178510 -recovered Augustus_model.g4495.t1, internal, 179311, 179381 -recovered Augustus_model.g4495.t1, internal, 179578, 179644 -recovered Augustus_model.g4495.t1, internal, 179754, 179932 -recovered Augustus_model.g4495.t1, internal, 180273, 180371 -recovered Augustus_model.g4495.t1, internal, 180546, 180710 -recovered Augustus_model.g4495.t1, internal, 180860, 180971 -recovered Augustus_model.g4495.t1, internal, 181066, 181143 -recovered Augustus_model.g4495.t1, internal, 181309, 181445 -recovered Augustus_model.g4495.t1, internal, 181549, 181704 -recovered Augustus_model.g4495.t1, internal, 181791, 181908 -recovered Augustus_model.g4495.t1, internal, 182048, 182205 -recovered Augustus_model.g4495.t1, internal, 182319, 182441 -recovered Augustus_model.g4495.t1, internal, 182562, 182738 -recovered Augustus_model.g4495.t1, internal, 182833, 182878 -recovered Augustus_model.g4495.t1, internal, 183280, 183341 -recovered Augustus_model.g4495.t1, internal, 183421, 183570 -recovered Augustus_model.g4495.t1, internal, 184067, 184163 Valid prediction for GeneMark_model.11350_t Valid prediction for snap_scaffold_3-snap.1364-T1 Valid prediction for GeneMark_model.11319_t Valid prediction for GeneMark_model.11345_t Valid prediction for GlimmerHMM_glimmerT_6867-T1 Valid prediction for HiQ_model.g4473.t1 Couldn't classify 36439, 36468 Sorry, prediction pasa_asmbl_40083.p1 fails validation. (AGA) AG 36439-36468 GT AGG (GTG) AG 36552-36629 GT AGG (GAG) AG 36710-36787 GT AGG (GTC) AG 36993-37220 AG AAA -recovered pasa_asmbl_40083.p1, terminal, 36993, 37220 -recovered pasa_asmbl_40083.p1, internal, 36439, 36468 -recovered pasa_asmbl_40083.p1, internal, 36552, 36629 -recovered pasa_asmbl_40083.p1, internal, 36710, 36787 Valid prediction for snap_scaffold_3-snap.1378-T1 Valid prediction for GeneMark_model.11320_t Valid prediction for Augustus_model.g4497.t1 Valid prediction for GeneMark_model.11343_t Valid prediction for GeneMark_model.11346_t Valid prediction for Augustus_model.g4476.t1 Valid prediction for snap_scaffold_3-snap.1392-T1 Couldn't classify 159831, 159867 Couldn't classify 162535, 162660 Sorry, prediction pasa_asmbl_40090.p1 fails validation. (AAA) GC 159831-159867 GT AGG (GAA) AG 159969-160042 GT CAG (CTA) AG 160168-160281 GT AAG (GAG) AG 160383-160520 GT TGG (GTG) AG 160674-161288 GT AGG (CTC) AG 161456-161557 GT TGG (TAT) AG 161934-162092 GT GGG (GTG) AG 162265-162444 GT TGG (ATC) AG 162535-162660 CA CCC -recovered pasa_asmbl_40090.p1, internal, 159969, 160042 -recovered pasa_asmbl_40090.p1, internal, 160168, 160281 -recovered pasa_asmbl_40090.p1, internal, 160383, 160520 -recovered pasa_asmbl_40090.p1, internal, 160674, 161288 -recovered pasa_asmbl_40090.p1, internal, 161456, 161557 -recovered pasa_asmbl_40090.p1, internal, 161934, 162092 -recovered pasa_asmbl_40090.p1, internal, 162265, 162444 Valid prediction for snap_scaffold_3-snap.1380-T1 Valid prediction for GeneMark_model.11362_t Couldn't classify 159483, 159606 Sorry, prediction GeneMark_model.11358_t fails validation. (GCG) AG 159483-159606 GT AAG (GAA) AG 159822-159874 GT TGG (GAA) AG 159969-160042 GT CAG (CTA) AG 160168-160281 GT AAG (GAG) AG 160383-160520 GT TGG (GTG) AG 160674-161288 GT AGG (CTC) AG 161456-161557 GT TGG (TAT) AG 161934-162092 GT GGG (GTG) AG 162265-162444 GT TGG (ATC) AG 162535-162747 GT AGG (GCA) AG 162851-163020 GT AGG (TGA) AG 163196-163317 GT GGG (GCA) AG 163468-164621 GT AGG (AGT) AG 164768-165045 GT AGG (GTT) AG 165147-165354 GT GGG (GAC) AG 165465-165547 GT AAG (ACA) AG 165642-165726 GT ACG (ATC) AG 165831-166076 GT ACG (TGG) AG 166211-166304 GT AGG (CCA) AG 166388-166504 GT TGG (CCA) AG 166590-166663 GT AGG (AAC) AG 166760-166852 GT AGG (GAT) AG 166977-167229 GT CAG (GTG) AG 167312-167388 TG GAT -recovered GeneMark_model.11358_t, terminal, 167312, 167388 -recovered GeneMark_model.11358_t, internal, 159483, 159606 -recovered GeneMark_model.11358_t, internal, 159822, 159874 -recovered GeneMark_model.11358_t, internal, 159969, 160042 -recovered GeneMark_model.11358_t, internal, 160168, 160281 -recovered GeneMark_model.11358_t, internal, 160383, 160520 -recovered GeneMark_model.11358_t, internal, 160674, 161288 -recovered GeneMark_model.11358_t, internal, 161456, 161557 -recovered GeneMark_model.11358_t, internal, 161934, 162092 -recovered GeneMark_model.11358_t, internal, 162265, 162444 -recovered GeneMark_model.11358_t, internal, 162535, 162747 -recovered GeneMark_model.11358_t, internal, 162851, 163020 -recovered GeneMark_model.11358_t, internal, 163196, 163317 -recovered GeneMark_model.11358_t, internal, 163468, 164621 -recovered GeneMark_model.11358_t, internal, 164768, 165045 -recovered GeneMark_model.11358_t, internal, 165147, 165354 -recovered GeneMark_model.11358_t, internal, 165465, 165547 -recovered GeneMark_model.11358_t, internal, 165642, 165726 -recovered GeneMark_model.11358_t, internal, 165831, 166076 -recovered GeneMark_model.11358_t, internal, 166211, 166304 -recovered GeneMark_model.11358_t, internal, 166388, 166504 -recovered GeneMark_model.11358_t, internal, 166590, 166663 -recovered GeneMark_model.11358_t, internal, 166760, 166852 -recovered GeneMark_model.11358_t, internal, 166977, 167229 Valid prediction for GeneMark_model.11321_t Valid prediction for GeneMark_model.11348_t Valid prediction for Augustus_model.g4483.t1 Valid prediction for GlimmerHMM_glimmerT_6849-T1 Valid prediction for snap_scaffold_3-snap.1353-T1 Valid prediction for CodingQuarry_transcript_46083-T1 Valid prediction for GlimmerHMM_glimmerT_6851-T1 Valid prediction for CodingQuarry_transcript_46081-T1 Valid prediction for GeneMark_model.11351_t Couldn't classify 173834, 174572 Couldn't classify 175009, 175060 Sorry, prediction pasa_asmbl_40095.p1 fails validation. (GAT) AT 173834-174572 GT TGG (CAT) AG 174761-174923 GT AGG (GCT) AG 175009-175060 GC TGG -recovered pasa_asmbl_40095.p1, internal, 174761, 174923 -recovered pasa_asmbl_40095.p1, internal, 175009, 175060 Couldn't classify 65800, 65862 Couldn't classify 71069, 71106 Sorry, prediction pasa_asmbl_40086.p1 fails validation. (GAC) TG 65800-65862 GT AGG (CTG) AG 65958-66188 GT ACG (GGG) AG 67855-67969 GT AGG (ACA) AG 70337-70497 GT AGG (GTG) AG 70659-70806 GT AGG (GAG) AG 71069-71106 GA CGG -recovered pasa_asmbl_40086.p1, internal, 65958, 66188 -recovered pasa_asmbl_40086.p1, internal, 67855, 67969 -recovered pasa_asmbl_40086.p1, internal, 70337, 70497 -recovered pasa_asmbl_40086.p1, internal, 70659, 70806 Valid prediction for Augustus_model.g4481.t1 Valid prediction for GlimmerHMM_glimmerT_6868-T1 Couldn't classify 34127, 34606 Couldn't classify 34722, 34805 Sorry, prediction pasa_asmbl_40081.p1 fails validation. (AGG) GG 34127-34606 GT AGG (GGT) AG 34722-34805 CT GGC Valid prediction for GlimmerHMM_glimmerT_6837-T1 Valid prediction for Augustus_model.g4479.t1 Valid prediction for GlimmerHMM_glimmerT_6840-T1 Valid prediction for GeneMark_model.11328_t Valid prediction for snap_scaffold_3-snap.1359-T1 Valid prediction for Augustus_model.g4496.t1 Couldn't classify 73300, 74017 Sorry, prediction pasa_asmbl_40087.p1 fails validation. (CCG) AC 73300-74017 GT AGG (GTG) AG 74841-75118 CC GAC -recovered pasa_asmbl_40087.p1, terminal, 74841, 75118 Valid prediction for snap_scaffold_3-snap.1394-T1 Valid prediction for snap_scaffold_3-snap.1385-T1 Valid prediction for snap_scaffold_3-snap.1361-T1 Valid prediction for GeneMark_model.11337_t Valid prediction for Augustus_model.g4480.t1 Valid prediction for GlimmerHMM_glimmerT_6841-T1 Valid prediction for GlimmerHMM_glimmerT_6844-T1 Couldn't classify 32261, 33562 Sorry, prediction pasa_asmbl_40080.p1 fails validation. (GAA) GA 32261-33562 AA AGA Valid prediction for GeneMark_model.11316_t Valid prediction for GeneMark_model.11356_t Valid prediction for GlimmerHMM_glimmerT_6864-T1 Valid prediction for GeneMark_model.11317_t Valid prediction for CodingQuarry_transcript_46082-T1 Valid prediction for GlimmerHMM_glimmerT_6860-T1 Valid prediction for GeneMark_model.11324_t Valid prediction for GlimmerHMM_glimmerT_6853-T1 Valid prediction for GeneMark_model.11340_t Valid prediction for pasa_asmbl_40089.p1 Valid prediction for snap_scaffold_3-snap.1375-T1 Valid prediction for GeneMark_model.11326_t Valid prediction for GlimmerHMM_glimmerT_6847-T1 Valid prediction for snap_scaffold_3-snap.1372-T1 Valid prediction for pasa_asmbl_40076.p1 Valid prediction for Augustus_model.g4482.t1 Valid prediction for CodingQuarry_transcript_46085-T1 Valid prediction for snap_scaffold_3-snap.1357-T1 Valid prediction for GlimmerHMM_glimmerT_6850-T1 Valid prediction for HiQ_model.g4486.t1 Valid prediction for HiQ_model.g4472.t1 Valid prediction for GeneMark_model.11331_t Valid prediction for GeneMark_model.11363_t Valid prediction for GlimmerHMM_glimmerT_6865-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for CodingQuarry_transcript_46079-T1 Valid prediction for GeneMark_model.11355_t Valid prediction for snap_scaffold_3-snap.1354-T1 Valid prediction for GeneMark_model.11361_t Couldn't classify 182383, 182441 Sorry, prediction pasa_asmbl_40100.p1 fails validation. (TCC) CC 182383-182441 GT GGG (CTG) AG 182562-182738 GT GAG (GAG) AG 182833-182878 GT AGG (GTC) AG 183280-183341 GT AGG (TAC) AG 183421-183570 GT AGG (GAT) AG 184067-184163 GT AGG (GCT) AG 184359-184397 TG AAT -recovered pasa_asmbl_40100.p1, terminal, 184359, 184397 -recovered pasa_asmbl_40100.p1, internal, 182562, 182738 -recovered pasa_asmbl_40100.p1, internal, 182833, 182878 -recovered pasa_asmbl_40100.p1, internal, 183280, 183341 -recovered pasa_asmbl_40100.p1, internal, 183421, 183570 -recovered pasa_asmbl_40100.p1, internal, 184067, 184163 Valid prediction for GeneMark_model.11335_t Valid prediction for GlimmerHMM_glimmerT_6846-T1 Valid prediction for GeneMark_model.11339_t Couldn't classify 180861, 180971 Couldn't classify 182048, 182116 Sorry, prediction pasa_asmbl_40822.p1 fails validation. (GGT) GA 180861-180971 GT CAG (GGC) AG 181066-181143 GT AGG (GGT) AG 181309-181445 GT CTG (TAA) AG 181549-181704 GT AGG (TCC) AG 181791-181908 GT AGG (GCG) AG 182048-182116 TA CCT -recovered pasa_asmbl_40822.p1, internal, 181066, 181143 -recovered pasa_asmbl_40822.p1, internal, 181309, 181445 -recovered pasa_asmbl_40822.p1, internal, 181549, 181704 -recovered pasa_asmbl_40822.p1, internal, 181791, 181908 Valid prediction for HiQ_model.g4485.t1 Valid prediction for GlimmerHMM_glimmerT_6866-T1 Valid prediction for pasa_asmbl_40776.p1 Couldn't classify 166321, 166504 Sorry, prediction pasa_asmbl_40093.p1 fails validation. (CAC) GG 166321-166504 GT TGG (CCA) AG 166590-166663 GT AGG (AAC) AG 166760-166852 GT AGG (GAT) AG 166977-167229 GT CAG (GTG) AG 167312-167388 TG GAT -recovered pasa_asmbl_40093.p1, terminal, 167312, 167388 -recovered pasa_asmbl_40093.p1, internal, 166590, 166663 -recovered pasa_asmbl_40093.p1, internal, 166760, 166852 -recovered pasa_asmbl_40093.p1, internal, 166977, 167229 Valid prediction for GlimmerHMM_glimmerT_6862-T1 Valid prediction for snap_scaffold_3-snap.1376-T1 Valid prediction for GlimmerHMM_glimmerT_6861-T1 Valid prediction for snap_scaffold_3-snap.1369-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_3-snap.1388-T1 Valid prediction for GlimmerHMM_glimmerT_6842-T1 Valid prediction for CodingQuarry_transcript_46080-T1 Valid prediction for snap_scaffold_3-snap.1356-T1 Valid prediction for CodingQuarry_transcript_46084-T1 Couldn't classify 175890, 175950 Couldn't classify 177686, 177742 Sorry, prediction pasa_asmbl_40098.p1 fails validation. (AAG) GG 175890-175950 GT AGG (AGA) AG 176215-176407 GT GAG (ATA) AG 176623-176688 GT GTG (GGA) AG 176832-176991 GT TGG (AAC) AG 177267-177398 GT CGG (GAC) AG 177686-177742 AC TGA -recovered pasa_asmbl_40098.p1, internal, 176215, 176407 -recovered pasa_asmbl_40098.p1, internal, 176623, 176688 -recovered pasa_asmbl_40098.p1, internal, 176832, 176991 -recovered pasa_asmbl_40098.p1, internal, 177267, 177398 Valid prediction for GlimmerHMM_glimmerT_6848-T1 Couldn't classify 34986, 36179 Sorry, prediction pasa_asmbl_40082.p1 fails validation. (GTG) CG 34986-36179 GT AGG Valid prediction for GeneMark_model.11342_t Valid prediction for GeneMark_model.11333_t Valid prediction for snap_scaffold_3-snap.1370-T1 Valid prediction for GlimmerHMM_glimmerT_6859-T1 Valid prediction for GlimmerHMM_glimmerT_6838-T1 Valid prediction for Augustus_model.g4488.t1 Valid prediction for snap_scaffold_3-snap.1389-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for Augustus_model.g4475.t1 Valid prediction for Augustus_model.g4484.t1 Valid prediction for snap_scaffold_3-snap.1377-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_3-snap.1358-T1 Valid prediction for snap_scaffold_3-snap.1360-T1 Valid prediction for GeneMark_model.11322_t Valid prediction for snap_scaffold_3-snap.1390-T1 Valid prediction for Augustus_model.g4491.t1 Valid prediction for GeneMark_model.11325_t Valid prediction for snap_scaffold_3-snap.1383-T1 Valid prediction for snap_scaffold_3-snap.1384-T1 Valid prediction for GeneMark_model.11329_t Valid prediction for GeneMark_model.11349_t Valid prediction for GlimmerHMM_glimmerT_6843-T1 Valid prediction for snap_scaffold_3-snap.1366-T1 Valid prediction for Augustus_model.g4494.t1 Valid prediction for GlimmerHMM_glimmerT_6863-T1 Couldn't classify 67795, 68346 Sorry, prediction pasa_asmbl_38900.p1 fails validation. (GCT) GG 67795-68346 GA GGG Valid prediction for Augustus_model.g4477.t1 Valid prediction for snap_scaffold_3-snap.1391-T1 Couldn't classify 40652, 40708 Sorry, prediction GeneMark_model.11357_t fails validation. (AGA) AG 40652-40708 GT GAG (AGG) AG 40905-41021 GT AAG (CAT) AG 41073-41180 GT GAG (CAA) AG 41884-41925 GT GAG (AGG) AG 41953-41961 GT GAG (AGG) AG 42571-42576 GT GAG (CAA) AG 42608-42701 GC GAG -recovered GeneMark_model.11357_t, terminal, 41073, 41180 -recovered GeneMark_model.11357_t, terminal, 41884, 41925 -recovered GeneMark_model.11357_t, terminal, 42608, 42701 -recovered GeneMark_model.11357_t, internal, 40652, 40708 -recovered GeneMark_model.11357_t, internal, 40905, 41021 -recovered GeneMark_model.11357_t, internal, 41073, 41180 -recovered GeneMark_model.11357_t, internal, 41884, 41925 -recovered GeneMark_model.11357_t, internal, 41953, 41961 -recovered GeneMark_model.11357_t, internal, 42571, 42576 -recovered GeneMark_model.11357_t, internal, 42608, 42701 Valid prediction for GlimmerHMM_glimmerT_6845-T1 Valid prediction for GeneMark_model.11360_t Valid prediction for snap_scaffold_3-snap.1365-T1 Valid prediction for GeneMark_model.11334_t Valid prediction for GeneMark_model.11344_t Valid prediction for snap_scaffold_3-snap.1373-T1 Couldn't classify 84090, 84167 Couldn't classify 84669, 84756 Sorry, prediction pasa_asmbl_38899.p1 fails validation. (CTG) AC 84090-84167 GT CAG (AGT) AG 84284-84492 GT AGG (ACT) AG 84669-84756 AG AGA -recovered pasa_asmbl_38899.p1, internal, 84284, 84492 Valid prediction for snap_scaffold_3-snap.1387-T1 Valid prediction for GeneMark_model.11338_t Valid prediction for GeneMark_model.11330_t Valid prediction for GeneMark_model.11352_t Valid prediction for snap_scaffold_3-snap.1355-T1 Valid prediction for GeneMark_model.11354_t Valid prediction for GlimmerHMM_glimmerT_6839-T1 Valid prediction for GeneMark_model.11353_t Valid prediction for snap_scaffold_3-snap.1363-T1 Valid prediction for snap_scaffold_3-snap.1362-T1 Valid prediction for GlimmerHMM_glimmerT_6856-T1 Valid prediction for Augustus_model.g4474.t1 Valid prediction for GeneMark_model.11323_t Valid prediction for GlimmerHMM_glimmerT_6852-T1 Valid prediction for Augustus_model.g4487.t1 Valid prediction for snap_scaffold_3-snap.1379-T1 Valid prediction for GlimmerHMM_glimmerT_6854-T1 Valid prediction for snap_scaffold_3-snap.1371-T1 Valid prediction for GeneMark_model.11359_t Valid prediction for snap_scaffold_3-snap.1374-T1 Valid prediction for snap_scaffold_3-snap.1393-T1 Valid prediction for GeneMark_model.11341_t Valid prediction for GlimmerHMM_glimmerT_6855-T1 Valid prediction for GeneMark_model.11347_t Valid prediction for Augustus_model.g4490.t1 Valid prediction for Augustus_model.g4489.t1 Valid prediction for GeneMark_model.11327_t Valid prediction for GeneMark_model.11336_t Valid prediction for Augustus_model.g4492.t1 Valid prediction for snap_scaffold_3-snap.1386-T1 Valid prediction for snap_scaffold_3-snap.1368-T1 Valid prediction for snap_scaffold_3-snap.1382-T1 Valid prediction for snap_scaffold_3-snap.1381-T1 Valid prediction for GlimmerHMM_glimmerT_6858-T1 Valid prediction for Augustus_model.g4478.t1 Valid prediction for GeneMark_model.11318_t Valid prediction for GeneMark_model.11332_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 19552, rend_intergenic: 16585 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30450, rend_intergenic: 26565 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37220, rend_intergenic: 30774 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58291, rend_intergenic: 39667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63885, rend_intergenic: 59505 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70340, rend_intergenic: 63941 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75118, rend_intergenic: 70341 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84627, rend_intergenic: 81334 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99862, rend_intergenic: 87187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125696, rend_intergenic: 111467 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144935, rend_intergenic: 142101 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157292, rend_intergenic: 148024 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162990, rend_intergenic: 159491 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184397, rend_intergenic: 173339 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185457, rend_intergenic: 185152 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190981, rend_intergenic: 186252 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 196828 -exon list size: 891 building trellis 0.1 0.2 0.3 0.4 0.6 0.7 0.8 0.9 1.0 1.1 1.2 1.3 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.2 5.3 5.4 5.5 5.6 5.7 5.8 5.9 6.0 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.1 7.2 7.3 7.4 7.5 7.6 7.7 7.8 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.8 11.9 12.0 12.1 12.2 12.3 12.4 12.5 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.7 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.3 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.3 18.4 18.5 18.6 18.7 18.8 18.9 19.0 19.1 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.2 20.3 20.4 20.5 20.6 20.7 20.8 20.9 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.8 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.9 25.0 25.1 25.2 25.3 25.4 25.5 25.6 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.7 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.5 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.3 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.4 31.5 31.6 31.7 31.8 31.9 32.0 32.1 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.3 33.4 33.5 33.6 33.7 33.8 33.9 34.0 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 35.9 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 38.0 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.5 40.6 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.4 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.5 44.6 44.7 44.8 44.9 45.0 45.1 45.2 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.4 46.5 46.6 46.7 46.8 46.9 47.0 47.1 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.2 48.3 48.4 48.5 48.6 48.7 48.8 48.9 49.0 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 51.0 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.8 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.9 53.0 53.1 53.2 53.3 53.4 53.5 53.6 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.8 54.9 55.0 55.1 55.2 55.3 55.4 55.5 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.6 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.4 59.5 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.0 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 66.0 66.1 66.2 66.3 66.4 66.5 66.6 66.7 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.9 68.0 68.1 68.2 68.3 68.4 68.5 68.6 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.7 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.5 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.3 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.4 74.5 74.6 74.7 74.8 74.9 75.0 75.1 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.2 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.1 79.2 79.3 79.4 79.5 79.6 79.7 79.8 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.9 81.0 81.1 81.2 81.3 81.4 81.5 81.6 81.7 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.7 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.3 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.5 87.6 87.7 87.8 87.9 88.0 88.1 88.2 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.2 92.3 92.4 92.5 92.6 92.7 92.8 92.9 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 94.0 94.1 94.2 94.3 94.4 94.5 94.6 94.7 94.8 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.7 98.8 98.9 99.0 99.1 99.2 99.3 99.4 99.6 99.7 99.8 99.9 -found 35 predictions from path traversal Error with prediction: snap lend_intergenic: 19552, rend_intergenic: 16585 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 30450, rend_intergenic: 26565 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37220, rend_intergenic: 30774 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 58291, rend_intergenic: 39667 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63885, rend_intergenic: 59505 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70340, rend_intergenic: 63941 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75118, rend_intergenic: 70341 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84627, rend_intergenic: 81334 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 99862, rend_intergenic: 87187 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125696, rend_intergenic: 111467 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144935, rend_intergenic: 142101 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157292, rend_intergenic: 148024 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162990, rend_intergenic: 159491 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 184397, rend_intergenic: 173339 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 185457, rend_intergenic: 185152 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190981, rend_intergenic: 186252 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 24 predictions persist after filtering for low support