-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_6309182-6666670 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g4447.t1 Valid prediction for snap_scaffold_3-snap.1331-T1 Valid prediction for GeneMark_model.11187_t Valid prediction for GeneMark_model.11260_t Valid prediction for GeneMark_model.11270_t Valid prediction for GlimmerHMM_glimmerT_6837-T1 Valid prediction for GeneMark_model.11303_t Valid prediction for snap_scaffold_3-snap.1334-T1 Valid prediction for GlimmerHMM_glimmerT_6802-T1 Valid prediction for Augustus_model.g4449.t1 Valid prediction for GlimmerHMM_glimmerT_6789-T1 Valid prediction for GlimmerHMM_glimmerT_6805-T1 Valid prediction for snap_scaffold_3-snap.1317-T1 Valid prediction for snap_scaffold_3-snap.1353-T1 Valid prediction for GeneMark_model.11210_t Valid prediction for GeneMark_model.11221_t Valid prediction for GeneMark_model.11290_t Valid prediction for snap_scaffold_3-snap.1315-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for snap_scaffold_3-snap.1320-T1 Valid prediction for HiQ_model.g4473.t1 Valid prediction for GeneMark_model.11263_t Valid prediction for Augustus_model.g4467.t1 Valid prediction for Augustus_model.g4445.t1 Valid prediction for GlimmerHMM_glimmerT_6836-T1 Valid prediction for Augustus_model.g4442.t1 Valid prediction for GeneMark_model.11199_t Valid prediction for GeneMark_model.11259_t Valid prediction for GeneMark_model.11225_t Valid prediction for snap_scaffold_3-snap.1350-T1 Valid prediction for GlimmerHMM_glimmerT_6798-T1 Valid prediction for snap_scaffold_3-snap.1297-T1 Valid prediction for Augustus_model.g4455.t1 Valid prediction for Augustus_model.g4430.t1 Valid prediction for GeneMark_model.11250_t Valid prediction for Augustus_model.g4450.t1 Valid prediction for snap_scaffold_3-snap.1338-T1 Valid prediction for Augustus_model.g4464.t1 Couldn't classify 254013, 254154 Couldn't classify 256836, 256910 Sorry, prediction pasa_asmbl_40808.p1 fails validation. (GGC) GC 254013-254154 GT CAG (CGT) AG 254244-254413 GT AGG (GTG) AG 256836-256910 TA CGT -recovered pasa_asmbl_40808.p1, internal, 254244, 254413 Valid prediction for Augustus_model.g4434.t1 Valid prediction for GlimmerHMM_glimmerT_6812-T1 Valid prediction for GeneMark_model.11278_t Valid prediction for snap_scaffold_3-snap.1305-T1 Valid prediction for HiQ_model.g4472.t1 Valid prediction for GlimmerHMM_glimmerT_6822-T1 Valid prediction for CodingQuarry_transcript_46080-T1 Valid prediction for GeneMark_model.11216_t Valid prediction for GeneMark_model.11257_t Valid prediction for Augustus_model.g4461.t1 Valid prediction for GlimmerHMM_glimmerT_6800-T1 Valid prediction for GlimmerHMM_glimmerT_6835-T1 Valid prediction for GeneMark_model.11205_t Valid prediction for GeneMark_model.11261_t Valid prediction for GeneMark_model.11212_t Valid prediction for GlimmerHMM_glimmerT_6771-T1 Valid prediction for GlimmerHMM_glimmerT_6817-T1 Valid prediction for Augustus_model.g4469.t1 Valid prediction for pasa_asmbl_40063.p1 Valid prediction for GeneMark_model.11283_t Valid prediction for GeneMark_model.11242_t Valid prediction for GeneMark_model.11188_t Valid prediction for GlimmerHMM_glimmerT_6797-T1 Valid prediction for snap_scaffold_3-snap.1316-T1 Valid prediction for GeneMark_model.11313_t Valid prediction for GeneMark_model.11287_t Valid prediction for GeneMark_model.11293_t Valid prediction for CodingQuarry_transcript_46081-T1 Valid prediction for GeneMark_model.11305_t Valid prediction for snap_scaffold_3-snap.1293-T1 Valid prediction for CodingQuarry_transcript_46078-T1 Valid prediction for GeneMark_model.11214_t Valid prediction for GlimmerHMM_glimmerT_6820-T1 Valid prediction for GeneMark_model.11314_t Valid prediction for GeneMark_model.11255_t Valid prediction for Augustus_model.g4428.t1 Couldn't classify 268763, 268900 Couldn't classify 270157, 270282 Sorry, prediction pasa_asmbl_40054.p1 fails validation. (CTT) GA 268763-268900 GT AGG (GTG) AG 269001-269174 GT AGG (ATT) AG 270157-270282 CT TGC -recovered pasa_asmbl_40054.p1, internal, 269001, 269174 Valid prediction for HiQ_model.g4471.t1 Valid prediction for GeneMark_model.11285_t Couldn't classify 343440, 343674 Sorry, prediction pasa_asmbl_40059.p1 fails validation. (TGG) CG 343440-343674 GT AGG (CCC) AG 343755-343874 GT TAG (TGG) AG 343967-344013 GT AGG (TGT) AG 344206-344244 CG GAC -recovered pasa_asmbl_40059.p1, terminal, 344206, 344244 -recovered pasa_asmbl_40059.p1, internal, 343755, 343874 -recovered pasa_asmbl_40059.p1, internal, 343967, 344013 Valid prediction for snap_scaffold_3-snap.1314-T1 Valid prediction for snap_scaffold_3-snap.1286-T1 Valid prediction for Augustus_model.g4436.t1 Valid prediction for GlimmerHMM_glimmerT_6831-T1 Valid prediction for GeneMark_model.11244_t Valid prediction for Augustus_model.g4458.t1 Valid prediction for snap_scaffold_3-snap.1348-T1 Valid prediction for snap_scaffold_3-snap.1289-T1 Valid prediction for Augustus_model.g4444.t1 Valid prediction for GeneMark_model.11308_t Valid prediction for GeneMark_model.11201_t Valid prediction for GlimmerHMM_glimmerT_6838-T1 Valid prediction for Augustus_model.g4452.t1 Valid prediction for Augustus_model.g4465.t1 Valid prediction for GeneMark_model.11230_t Valid prediction for GlimmerHMM_glimmerT_6772-T1 Valid prediction for GlimmerHMM_glimmerT_6832-T1 Valid prediction for GlimmerHMM_glimmerT_6799-T1 Valid prediction for GlimmerHMM_glimmerT_6773-T1 Valid prediction for GeneMark_model.11307_t Valid prediction for GeneMark_model.11227_t Valid prediction for GeneMark_model.11252_t Valid prediction for GlimmerHMM_glimmerT_6826-T1 Valid prediction for GeneMark_model.11192_t Valid prediction for GeneMark_model.11275_t Valid prediction for GeneMark_model.11240_t Valid prediction for snap_scaffold_3-snap.1341-T1 Valid prediction for GeneMark_model.11207_t Valid prediction for GlimmerHMM_glimmerT_6825-T1 Valid prediction for snap_scaffold_3-snap.1323-T1 Valid prediction for snap_scaffold_3-snap.1302-T1 Valid prediction for snap_scaffold_3-snap.1290-T1 Valid prediction for GlimmerHMM_glimmerT_6777-T1 Valid prediction for Augustus_model.g4459.t1 Valid prediction for GeneMark_model.11234_t Valid prediction for snap_scaffold_3-snap.1324-T1 Valid prediction for GeneMark_model.11311_t Valid prediction for GeneMark_model.11291_t Valid prediction for GlimmerHMM_glimmerT_6829-T1 Valid prediction for GeneMark_model.11258_t Valid prediction for GlimmerHMM_glimmerT_6808-T1 Valid prediction for GlimmerHMM_glimmerT_6769-T1 Valid prediction for GeneMark_model.11302_t Valid prediction for snap_scaffold_3-snap.1329-T1 Valid prediction for Augustus_model.g4454.t1 Valid prediction for GlimmerHMM_glimmerT_6793-T1 Valid prediction for GlimmerHMM_glimmerT_6828-T1 Valid prediction for Augustus_model.g4439.t1 Valid prediction for snap_scaffold_3-snap.1352-T1 Valid prediction for GeneMark_model.11236_t Valid prediction for GlimmerHMM_glimmerT_6827-T1 Valid prediction for Augustus_model.g4460.t1 Valid prediction for GlimmerHMM_glimmerT_6818-T1 Valid prediction for GeneMark_model.11267_t Valid prediction for GlimmerHMM_glimmerT_6781-T1 Valid prediction for Augustus_model.g4443.t1 Valid prediction for Augustus_model.g4438.t1 Valid prediction for CodingQuarry_transcript_46079-T1 Valid prediction for Augustus_model.g4432.t1 Valid prediction for GlimmerHMM_glimmerT_6785-T1 Valid prediction for Augustus_model.g4466.t1 Valid prediction for GeneMark_model.11272_t Valid prediction for Augustus_model.g4427.t1 Valid prediction for GeneMark_model.11265_t Valid prediction for snap_scaffold_3-snap.1291-T1 Valid prediction for snap_scaffold_3-snap.1313-T1 Valid prediction for Augustus_model.g4440.t1 Valid prediction for GlimmerHMM_glimmerT_6830-T1 Valid prediction for GeneMark_model.11196_t Valid prediction for GlimmerHMM_glimmerT_6791-T1 Valid prediction for GlimmerHMM_glimmerT_6778-T1 Valid prediction for GeneMark_model.11296_t Valid prediction for GeneMark_model.11316_t Valid prediction for snap_scaffold_3-snap.1344-T1 Valid prediction for GlimmerHMM_glimmerT_6806-T1 Valid prediction for GeneMark_model.11273_t Valid prediction for GeneMark_model.11281_t Valid prediction for Augustus_model.g4462.t1 Valid prediction for GeneMark_model.11310_t Valid prediction for GeneMark_model.11317_t Valid prediction for GeneMark_model.11300_t Valid prediction for snap_scaffold_3-snap.1342-T1 Valid prediction for GeneMark_model.11219_t Valid prediction for GeneMark_model.11246_t Valid prediction for GeneMark_model.11194_t Valid prediction for GeneMark_model.11248_t Valid prediction for GeneMark_model.11203_t Valid prediction for GeneMark_model.11253_t Valid prediction for GlimmerHMM_glimmerT_6775-T1 Valid prediction for snap_scaffold_3-snap.1298-T1 Valid prediction for snap_scaffold_3-snap.1346-T1 Valid prediction for snap_scaffold_3-snap.1303-T1 Valid prediction for GlimmerHMM_glimmerT_6833-T1 Valid prediction for GeneMark_model.11298_t Valid prediction for GeneMark_model.11190_t Valid prediction for pasa_asmbl_40058.p1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_6821-T1 Valid prediction for snap_scaffold_3-snap.1301-T1 Valid prediction for snap_scaffold_3-snap.1319-T1 Valid prediction for GlimmerHMM_glimmerT_6823-T1 Valid prediction for Augustus_model.g4429.t1 Valid prediction for GlimmerHMM_glimmerT_6801-T1 Valid prediction for Augustus_model.g4457.t1 Valid prediction for GeneMark_model.11237_t Valid prediction for GeneMark_model.11189_t Valid prediction for GeneMark_model.11206_t Valid prediction for GeneMark_model.11235_t Valid prediction for GeneMark_model.11202_t Valid prediction for snap_scaffold_3-snap.1292-T1 Valid prediction for GeneMark_model.11247_t Valid prediction for GeneMark_model.11238_t Valid prediction for snap_scaffold_3-snap.1325-T1 Valid prediction for GlimmerHMM_glimmerT_6794-T1 Valid prediction for GeneMark_model.11226_t Valid prediction for snap_scaffold_3-snap.1294-T1 Valid prediction for GlimmerHMM_glimmerT_6804-T1 Valid prediction for snap_scaffold_3-snap.1306-T1 Valid prediction for GlimmerHMM_glimmerT_6807-T1 Valid prediction for GlimmerHMM_glimmerT_6816-T1 Valid prediction for GeneMark_model.11228_t Valid prediction for GlimmerHMM_glimmerT_6834-T1 Valid prediction for GlimmerHMM_glimmerT_6782-T1 Valid prediction for GeneMark_model.11264_t Valid prediction for GeneMark_model.11254_t Valid prediction for GeneMark_model.11280_t Valid prediction for GlimmerHMM_glimmerT_6779-T1 Valid prediction for GlimmerHMM_glimmerT_6803-T1 Valid prediction for GeneMark_model.11197_t Valid prediction for GlimmerHMM_glimmerT_6815-T1 Valid prediction for snap_scaffold_3-snap.1327-T1 Valid prediction for GlimmerHMM_glimmerT_6774-T1 Valid prediction for GlimmerHMM_glimmerT_6790-T1 Valid prediction for Augustus_model.g4463.t1 Valid prediction for snap_scaffold_3-snap.1322-T1 Valid prediction for GeneMark_model.11315_t Valid prediction for snap_scaffold_3-snap.1330-T1 Valid prediction for snap_scaffold_3-snap.1347-T1 Valid prediction for Augustus_model.g4470.t1 Valid prediction for snap_scaffold_3-snap.1288-T1 Valid prediction for Augustus_model.g4435.t1 Valid prediction for GeneMark_model.11191_t Valid prediction for GeneMark_model.11249_t Valid prediction for snap_scaffold_3-snap.1339-T1 Valid prediction for GeneMark_model.11217_t Valid prediction for snap_scaffold_3-snap.1310-T1 Valid prediction for GeneMark_model.11256_t Valid prediction for GeneMark_model.11213_t Valid prediction for GeneMark_model.11284_t Valid prediction for snap_scaffold_3-snap.1296-T1 Valid prediction for GeneMark_model.11306_t Valid prediction for GeneMark_model.11301_t Valid prediction for snap_scaffold_3-snap.1304-T1 Valid prediction for GlimmerHMM_glimmerT_6795-T1 Valid prediction for Augustus_model.g4448.t1 Valid prediction for GeneMark_model.11289_t Valid prediction for GeneMark_model.11269_t Valid prediction for Augustus_model.g4451.t1 Valid prediction for GlimmerHMM_glimmerT_6787-T1 Valid prediction for snap_scaffold_3-snap.1295-T1 Valid prediction for GlimmerHMM_glimmerT_6811-T1 Valid prediction for GeneMark_model.11295_t Valid prediction for GeneMark_model.11198_t Valid prediction for snap_scaffold_3-snap.1309-T1 Valid prediction for GeneMark_model.11268_t Valid prediction for Augustus_model.g4433.t1 Valid prediction for snap_scaffold_3-snap.1307-T1 Valid prediction for Augustus_model.g4426.t1 Valid prediction for Augustus_model.g4431.t1 Valid prediction for Augustus_model.g4441.t1 Valid prediction for snap_scaffold_3-snap.1311-T1 Valid prediction for snap_scaffold_3-snap.1328-T1 Valid prediction for GlimmerHMM_glimmerT_6784-T1 Valid prediction for GlimmerHMM_glimmerT_6813-T1 Valid prediction for GeneMark_model.11231_t Valid prediction for GeneMark_model.11229_t Valid prediction for GeneMark_model.11193_t Valid prediction for GeneMark_model.11282_t Valid prediction for GeneMark_model.11215_t Valid prediction for GeneMark_model.11266_t Valid prediction for GeneMark_model.11309_t Valid prediction for GeneMark_model.11233_t Valid prediction for GeneMark_model.11239_t Valid prediction for snap_scaffold_3-snap.1299-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for snap_scaffold_3-snap.1337-T1 Valid prediction for GeneMark_model.11224_t Valid prediction for GeneMark_model.11274_t Valid prediction for GeneMark_model.11208_t Valid prediction for GlimmerHMM_glimmerT_6776-T1 Valid prediction for GeneMark_model.11288_t Valid prediction for GeneMark_model.11276_t Valid prediction for GeneMark_model.11286_t Valid prediction for snap_scaffold_3-snap.1312-T1 Valid prediction for snap_scaffold_3-snap.1287-T1 Valid prediction for Augustus_model.g4453.t1 Valid prediction for GeneMark_model.11277_t Valid prediction for snap_scaffold_3-snap.1318-T1 Valid prediction for GeneMark_model.11204_t Valid prediction for snap_scaffold_3-snap.1332-T1 Valid prediction for GeneMark_model.11312_t Valid prediction for snap_scaffold_3-snap.1326-T1 Valid prediction for snap_scaffold_3-snap.1349-T1 Valid prediction for snap_scaffold_3-snap.1336-T1 Valid prediction for snap_scaffold_3-snap.1345-T1 Valid prediction for Augustus_model.g4446.t1 Valid prediction for GlimmerHMM_glimmerT_6780-T1 Valid prediction for GeneMark_model.11209_t Valid prediction for GlimmerHMM_glimmerT_6786-T1 Valid prediction for GeneMark_model.11243_t Valid prediction for GeneMark_model.11245_t Valid prediction for GeneMark_model.11262_t Valid prediction for GeneMark_model.11299_t Valid prediction for GlimmerHMM_glimmerT_6796-T1 Valid prediction for GeneMark_model.11218_t Valid prediction for GeneMark_model.11186_t Valid prediction for Augustus_model.g4437.t1 Valid prediction for GeneMark_model.11223_t Valid prediction for GeneMark_model.11279_t Valid prediction for snap_scaffold_3-snap.1321-T1 Valid prediction for GlimmerHMM_glimmerT_6824-T1 Valid prediction for GeneMark_model.11232_t Valid prediction for GlimmerHMM_glimmerT_6792-T1 Valid prediction for GlimmerHMM_glimmerT_6770-T1 Valid prediction for GlimmerHMM_glimmerT_6783-T1 Valid prediction for snap_scaffold_3-snap.1343-T1 Valid prediction for snap_scaffold_3-snap.1300-T1 Valid prediction for GeneMark_model.11297_t Valid prediction for snap_scaffold_3-snap.1333-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.11292_t Valid prediction for GeneMark_model.11271_t Valid prediction for GeneMark_model.11222_t Valid prediction for GeneMark_model.11220_t Valid prediction for GlimmerHMM_glimmerT_6814-T1 Valid prediction for snap_scaffold_3-snap.1308-T1 Valid prediction for GeneMark_model.11294_t Valid prediction for GlimmerHMM_glimmerT_6810-T1 Valid prediction for GeneMark_model.11241_t Valid prediction for GlimmerHMM_glimmerT_6788-T1 Valid prediction for GlimmerHMM_glimmerT_6809-T1 Valid prediction for GlimmerHMM_glimmerT_6819-T1 Valid prediction for snap_scaffold_3-snap.1340-T1 Valid prediction for GeneMark_model.11200_t Valid prediction for snap_scaffold_3-snap.1335-T1 Valid prediction for GeneMark_model.11251_t Valid prediction for Augustus_model.g4468.t1 Valid prediction for Augustus_model.g4456.t1 Valid prediction for snap_scaffold_3-snap.1351-T1 Valid prediction for GeneMark_model.11304_t Valid prediction for GeneMark_model.11211_t Valid prediction for GeneMark_model.11195_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12752, rend_intergenic: 5501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23828, rend_intergenic: 22464 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27494, rend_intergenic: 24217 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40407, rend_intergenic: 28033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54503, rend_intergenic: 50361 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60240, rend_intergenic: 58578 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85377, rend_intergenic: 71388 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95423, rend_intergenic: 85579 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97761, rend_intergenic: 95696 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144891, rend_intergenic: 98614 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151352, rend_intergenic: 144957 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172877, rend_intergenic: 162516 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179900, rend_intergenic: 173504 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196497, rend_intergenic: 182439 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203434, rend_intergenic: 196862 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 221808, rend_intergenic: 207882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 254720, rend_intergenic: 232546 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 271520, rend_intergenic: 254775 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 283111, rend_intergenic: 274376 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 308534, rend_intergenic: 294913 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 317787, rend_intergenic: 313862 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 326380, rend_intergenic: 322119 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 332173, rend_intergenic: 327128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 344446, rend_intergenic: 341168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 346513, rend_intergenic: 344563 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 357489 -exon list size: 1747 building trellis 0.1 0.1 0.2 0.2 0.3 0.3 0.4 0.5 0.5 0.6 0.6 0.7 0.7 0.8 0.9 0.9 1.0 1.0 1.1 1.1 1.2 1.3 1.3 1.4 1.4 1.5 1.5 1.6 1.7 1.7 1.8 1.8 1.9 1.9 2.0 2.1 2.1 2.2 2.2 2.3 2.3 2.4 2.5 2.5 2.6 2.6 2.7 2.7 2.8 2.9 2.9 3.0 3.0 3.1 3.1 3.2 3.3 3.3 3.4 3.4 3.5 3.5 3.6 3.7 3.7 3.8 3.8 3.9 3.9 4.0 4.1 4.1 4.2 4.2 4.3 4.3 4.4 4.5 4.5 4.6 4.6 4.7 4.7 4.8 4.9 4.9 5.0 5.0 5.1 5.1 5.2 5.3 5.3 5.4 5.4 5.5 5.5 5.6 5.7 5.7 5.8 5.8 5.9 5.9 6.0 6.1 6.1 6.2 6.2 6.3 6.3 6.4 6.5 6.5 6.6 6.6 6.7 6.7 6.8 6.9 6.9 7.0 7.0 7.1 7.1 7.2 7.3 7.3 7.4 7.4 7.5 7.5 7.6 7.7 7.7 7.8 7.8 7.9 7.9 8.0 8.1 8.1 8.2 8.2 8.3 8.3 8.4 8.5 8.5 8.6 8.6 8.7 8.7 8.8 8.9 8.9 9.0 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.4 9.5 9.5 9.6 9.7 9.7 9.8 9.8 9.9 9.9 10.0 10.1 10.1 10.2 10.2 10.3 10.3 10.4 10.5 10.5 10.6 10.6 10.7 10.7 10.8 10.9 10.9 11.0 11.0 11.1 11.1 11.2 11.3 11.3 11.4 11.4 11.5 11.5 11.6 11.7 11.7 11.8 11.8 11.9 11.9 12.0 12.1 12.1 12.2 12.2 12.3 12.3 12.4 12.5 12.5 12.6 12.6 12.7 12.8 12.8 12.9 12.9 13.0 13.0 13.1 13.2 13.2 13.3 13.3 13.4 13.4 13.5 13.6 13.6 13.7 13.7 13.8 13.8 13.9 14.0 14.0 14.1 14.1 14.2 14.2 14.3 14.4 14.4 14.5 14.5 14.6 14.6 14.7 14.8 14.8 14.9 14.9 15.0 15.0 15.1 15.2 15.2 15.3 15.3 15.4 15.4 15.5 15.6 15.6 15.7 15.7 15.8 15.8 15.9 16.0 16.0 16.1 16.1 16.2 16.2 16.3 16.4 16.4 16.5 16.5 16.6 16.6 16.7 16.8 16.8 16.9 16.9 17.0 17.0 17.1 17.2 17.2 17.3 17.3 17.4 17.4 17.5 17.6 17.6 17.7 17.7 17.8 17.8 17.9 18.0 18.0 18.1 18.1 18.2 18.2 18.3 18.4 18.4 18.5 18.5 18.6 18.6 18.7 18.8 18.8 18.9 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.3 19.4 19.4 19.5 19.6 19.6 19.7 19.7 19.8 19.8 19.9 20.0 20.0 20.1 20.1 20.2 20.2 20.3 20.4 20.4 20.5 20.5 20.6 20.6 20.7 20.8 20.8 20.9 20.9 21.0 21.0 21.1 21.2 21.2 21.3 21.3 21.4 21.4 21.5 21.6 21.6 21.7 21.7 21.8 21.8 21.9 22.0 22.0 22.1 22.1 22.2 22.2 22.3 22.4 22.4 22.5 22.5 22.6 22.6 22.7 22.8 22.8 22.9 22.9 23.0 23.0 23.1 23.2 23.2 23.3 23.3 23.4 23.4 23.5 23.6 23.6 23.7 23.7 23.8 23.8 23.9 24.0 24.0 24.1 24.1 24.2 24.2 24.3 24.4 24.4 24.5 24.5 24.6 24.6 24.7 24.8 24.8 24.9 24.9 25.0 25.0 25.1 25.2 25.2 25.3 25.3 25.4 25.4 25.5 25.6 25.6 25.7 25.7 25.8 25.8 25.9 26.0 26.0 26.1 26.1 26.2 26.2 26.3 26.4 26.4 26.5 26.5 26.6 26.6 26.7 26.8 26.8 26.9 26.9 27.0 27.0 27.1 27.2 27.2 27.3 27.3 27.4 27.4 27.5 27.6 27.6 27.7 27.7 27.8 27.8 27.9 28.0 28.0 28.1 28.1 28.2 28.2 28.3 28.4 28.4 28.5 28.5 28.6 28.6 28.7 28.8 28.8 28.9 28.9 29.0 29.0 29.1 29.2 29.2 29.3 29.3 29.4 29.4 29.5 29.6 29.6 29.7 29.7 29.8 29.8 29.9 30.0 30.0 30.1 30.1 30.2 30.2 30.3 30.4 30.4 30.5 30.5 30.6 30.6 30.7 30.8 30.8 30.9 30.9 31.0 31.0 31.1 31.2 31.2 31.3 31.3 31.4 31.4 31.5 31.6 31.6 31.7 31.7 31.8 31.8 31.9 32.0 32.0 32.1 32.1 32.2 32.2 32.3 32.4 32.4 32.5 32.5 32.6 32.6 32.7 32.8 32.8 32.9 32.9 33.0 33.0 33.1 33.2 33.2 33.3 33.3 33.4 33.4 33.5 33.6 33.6 33.7 33.7 33.8 33.8 33.9 34.0 34.0 34.1 34.1 34.2 34.2 34.3 34.4 34.4 34.5 34.5 34.6 34.6 34.7 34.8 34.8 34.9 34.9 35.0 35.0 35.1 35.2 35.2 35.3 35.3 35.4 35.4 35.5 35.6 35.6 35.7 35.7 35.8 35.8 35.9 36.0 36.0 36.1 36.1 36.2 36.2 36.3 36.4 36.4 36.5 36.5 36.6 36.6 36.7 36.8 36.8 36.9 36.9 37.0 37.0 37.1 37.2 37.2 37.3 37.3 37.4 37.4 37.5 37.6 37.6 37.7 37.7 37.8 37.9 37.9 38.0 38.0 38.1 38.1 38.2 38.3 38.3 38.4 38.4 38.5 38.5 38.6 38.7 38.7 38.8 38.8 38.9 38.9 39.0 39.1 39.1 39.2 39.2 39.3 39.3 39.4 39.5 39.5 39.6 39.6 39.7 39.7 39.8 39.9 39.9 40.0 40.0 40.1 40.1 40.2 40.3 40.3 40.4 40.4 40.5 40.5 40.6 40.7 40.7 40.8 40.8 40.9 40.9 41.0 41.1 41.1 41.2 41.2 41.3 41.3 41.4 41.5 41.5 41.6 41.6 41.7 41.7 41.8 41.9 41.9 42.0 42.0 42.1 42.1 42.2 42.3 42.3 42.4 42.4 42.5 42.5 42.6 42.7 42.7 42.8 42.8 42.9 42.9 43.0 43.1 43.1 43.2 43.2 43.3 43.3 43.4 43.5 43.5 43.6 43.6 43.7 43.7 43.8 43.9 43.9 44.0 44.0 44.1 44.1 44.2 44.3 44.3 44.4 44.4 44.5 44.5 44.6 44.7 44.7 44.8 44.8 44.9 44.9 45.0 45.1 45.1 45.2 45.2 45.3 45.3 45.4 45.5 45.5 45.6 45.6 45.7 45.7 45.8 45.9 45.9 46.0 46.0 46.1 46.1 46.2 46.3 46.3 46.4 46.4 46.5 46.5 46.6 46.7 46.7 46.8 46.8 46.9 46.9 47.0 47.1 47.1 47.2 47.2 47.3 47.3 47.4 47.5 47.5 47.6 47.6 47.7 47.7 47.8 47.9 47.9 48.0 48.0 48.1 48.1 48.2 48.3 48.3 48.4 48.4 48.5 48.5 48.6 48.7 48.7 48.8 48.8 48.9 48.9 49.0 49.1 49.1 49.2 49.2 49.3 49.3 49.4 49.5 49.5 49.6 49.6 49.7 49.7 49.8 49.9 49.9 50.0 50.0 50.1 50.1 50.2 50.3 50.3 50.4 50.4 50.5 50.5 50.6 50.7 50.7 50.8 50.8 50.9 50.9 51.0 51.1 51.1 51.2 51.2 51.3 51.3 51.4 51.5 51.5 51.6 51.6 51.7 51.7 51.8 51.9 51.9 52.0 52.0 52.1 52.1 52.2 52.3 52.3 52.4 52.4 52.5 52.5 52.6 52.7 52.7 52.8 52.8 52.9 52.9 53.0 53.1 53.1 53.2 53.2 53.3 53.3 53.4 53.5 53.5 53.6 53.6 53.7 53.7 53.8 53.9 53.9 54.0 54.0 54.1 54.1 54.2 54.3 54.3 54.4 54.4 54.5 54.5 54.6 54.7 54.7 54.8 54.8 54.9 54.9 55.0 55.1 55.1 55.2 55.2 55.3 55.3 55.4 55.5 55.5 55.6 55.6 55.7 55.7 55.8 55.9 55.9 56.0 56.0 56.1 56.1 56.2 56.3 56.3 56.4 56.4 56.5 56.5 56.6 56.7 56.7 56.8 56.8 56.9 56.9 57.0 57.1 57.1 57.2 57.2 57.3 57.3 57.4 57.5 57.5 57.6 57.6 57.7 57.7 57.8 57.9 57.9 58.0 58.0 58.1 58.1 58.2 58.3 58.3 58.4 58.4 58.5 58.5 58.6 58.7 58.7 58.8 58.8 58.9 58.9 59.0 59.1 59.1 59.2 59.2 59.3 59.3 59.4 59.5 59.5 59.6 59.6 59.7 59.7 59.8 59.9 59.9 60.0 60.0 60.1 60.1 60.2 60.3 60.3 60.4 60.4 60.5 60.5 60.6 60.7 60.7 60.8 60.8 60.9 60.9 61.0 61.1 61.1 61.2 61.2 61.3 61.3 61.4 61.5 61.5 61.6 61.6 61.7 61.7 61.8 61.9 61.9 62.0 62.0 62.1 62.1 62.2 62.3 62.3 62.4 62.4 62.5 62.6 62.6 62.7 62.7 62.8 62.8 62.9 63.0 63.0 63.1 63.1 63.2 63.2 63.3 63.4 63.4 63.5 63.5 63.6 63.6 63.7 63.8 63.8 63.9 63.9 64.0 64.0 64.1 64.2 64.2 64.3 64.3 64.4 64.4 64.5 64.6 64.6 64.7 64.7 64.8 64.8 64.9 65.0 65.0 65.1 65.1 65.2 65.2 65.3 65.4 65.4 65.5 65.5 65.6 65.6 65.7 65.8 65.8 65.9 65.9 66.0 66.0 66.1 66.2 66.2 66.3 66.3 66.4 66.4 66.5 66.6 66.6 66.7 66.7 66.8 66.8 66.9 67.0 67.0 67.1 67.1 67.2 67.2 67.3 67.4 67.4 67.5 67.5 67.6 67.6 67.7 67.8 67.8 67.9 67.9 68.0 68.0 68.1 68.2 68.2 68.3 68.3 68.4 68.4 68.5 68.6 68.6 68.7 68.7 68.8 68.8 68.9 69.0 69.0 69.1 69.1 69.2 69.2 69.3 69.4 69.4 69.5 69.5 69.6 69.6 69.7 69.8 69.8 69.9 69.9 70.0 70.0 70.1 70.2 70.2 70.3 70.3 70.4 70.4 70.5 70.6 70.6 70.7 70.7 70.8 70.8 70.9 71.0 71.0 71.1 71.1 71.2 71.2 71.3 71.4 71.4 71.5 71.5 71.6 71.6 71.7 71.8 71.8 71.9 71.9 72.0 72.0 72.1 72.2 72.2 72.3 72.3 72.4 72.4 72.5 72.6 72.6 72.7 72.7 72.8 72.8 72.9 73.0 73.0 73.1 73.1 73.2 73.2 73.3 73.4 73.4 73.5 73.5 73.6 73.6 73.7 73.8 73.8 73.9 73.9 74.0 74.0 74.1 74.2 74.2 74.3 74.3 74.4 74.4 74.5 74.6 74.6 74.7 74.7 74.8 74.8 74.9 75.0 75.0 75.1 75.1 75.2 75.2 75.3 75.4 75.4 75.5 75.5 75.6 75.6 75.7 75.8 75.8 75.9 75.9 76.0 76.0 76.1 76.2 76.2 76.3 76.3 76.4 76.4 76.5 76.6 76.6 76.7 76.7 76.8 76.8 76.9 77.0 77.0 77.1 77.1 77.2 77.2 77.3 77.4 77.4 77.5 77.5 77.6 77.6 77.7 77.8 77.8 77.9 77.9 78.0 78.0 78.1 78.2 78.2 78.3 78.3 78.4 78.4 78.5 78.6 78.6 78.7 78.7 78.8 78.8 78.9 79.0 79.0 79.1 79.1 79.2 79.2 79.3 79.4 79.4 79.5 79.5 79.6 79.6 79.7 79.8 79.8 79.9 79.9 80.0 80.0 80.1 80.2 80.2 80.3 80.3 80.4 80.4 80.5 80.6 80.6 80.7 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.1 81.2 81.2 81.3 81.4 81.4 81.5 81.5 81.6 81.6 81.7 81.8 81.8 81.9 81.9 82.0 82.0 82.1 82.2 82.2 82.3 82.3 82.4 82.4 82.5 82.6 82.6 82.7 82.7 82.8 82.8 82.9 83.0 83.0 83.1 83.1 83.2 83.2 83.3 83.4 83.4 83.5 83.5 83.6 83.6 83.7 83.8 83.8 83.9 83.9 84.0 84.0 84.1 84.2 84.2 84.3 84.3 84.4 84.4 84.5 84.6 84.6 84.7 84.7 84.8 84.8 84.9 85.0 85.0 85.1 85.1 85.2 85.2 85.3 85.4 85.4 85.5 85.5 85.6 85.6 85.7 85.8 85.8 85.9 85.9 86.0 86.0 86.1 86.2 86.2 86.3 86.3 86.4 86.4 86.5 86.6 86.6 86.7 86.7 86.8 86.8 86.9 87.0 87.0 87.1 87.1 87.2 87.2 87.3 87.4 87.4 87.5 87.5 87.6 87.7 87.7 87.8 87.8 87.9 87.9 88.0 88.1 88.1 88.2 88.2 88.3 88.3 88.4 88.5 88.5 88.6 88.6 88.7 88.7 88.8 88.9 88.9 89.0 89.0 89.1 89.1 89.2 89.3 89.3 89.4 89.4 89.5 89.5 89.6 89.7 89.7 89.8 89.8 89.9 89.9 90.0 90.1 90.1 90.2 90.2 90.3 90.3 90.4 90.5 90.5 90.6 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.0 91.1 91.1 91.2 91.3 91.3 91.4 91.4 91.5 91.5 91.6 91.7 91.7 91.8 91.8 91.9 91.9 92.0 92.1 92.1 92.2 92.2 92.3 92.3 92.4 92.5 92.5 92.6 92.6 92.7 92.7 92.8 92.9 92.9 93.0 93.0 93.1 93.1 93.2 93.3 93.3 93.4 93.4 93.5 93.5 93.6 93.7 93.7 93.8 93.8 93.9 93.9 94.0 94.1 94.1 94.2 94.2 94.3 94.3 94.4 94.5 94.5 94.6 94.6 94.7 94.7 94.8 94.9 94.9 95.0 95.0 95.1 95.1 95.2 95.3 95.3 95.4 95.4 95.5 95.5 95.6 95.7 95.7 95.8 95.8 95.9 95.9 96.0 96.1 96.1 96.2 96.2 96.3 96.3 96.4 96.5 96.5 96.6 96.6 96.7 96.7 96.8 96.9 96.9 97.0 97.0 97.1 97.1 97.2 97.3 97.3 97.4 97.4 97.5 97.5 97.6 97.7 97.7 97.8 97.8 97.9 97.9 98.0 98.1 98.1 98.2 98.2 98.3 98.3 98.4 98.5 98.5 98.6 98.6 98.7 98.7 98.8 98.9 98.9 99.0 99.0 99.1 99.1 99.2 99.3 99.3 99.4 99.4 99.5 99.5 99.6 99.7 99.7 99.8 99.8 99.9 99.9 -found 96 predictions from path traversal Error with prediction: snap lend_intergenic: 12752, rend_intergenic: 5501 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23828, rend_intergenic: 22464 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27494, rend_intergenic: 24217 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40407, rend_intergenic: 28033 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 54503, rend_intergenic: 50361 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60240, rend_intergenic: 58578 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 85377, rend_intergenic: 71388 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 95423, rend_intergenic: 85579 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97761, rend_intergenic: 95696 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144891, rend_intergenic: 98614 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151352, rend_intergenic: 144957 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172877, rend_intergenic: 162516 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179900, rend_intergenic: 173504 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196497, rend_intergenic: 182439 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203434, rend_intergenic: 196862 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 221808, rend_intergenic: 207882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 254720, rend_intergenic: 232546 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 271520, rend_intergenic: 254775 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 283111, rend_intergenic: 274376 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 308534, rend_intergenic: 294913 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 317787, rend_intergenic: 313862 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 326380, rend_intergenic: 322119 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 332173, rend_intergenic: 327128 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 344446, rend_intergenic: 341168 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 346513, rend_intergenic: 344563 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 33 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 11667 -exon list size: 28 building trellis 3.3 6.7 10.0 13.3 16.7 20.0 23.3 26.7 30.0 33.3 36.7 40.0 43.3 46.7 50.0 53.3 56.7 60.0 63.3 66.7 70.0 73.3 76.7 80.0 83.3 86.7 90.0 93.3 96.7 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support