-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_5876109-6311562 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.11156_t Valid prediction for Augustus_model.g4410.t1 Valid prediction for GeneMark_model.11178_t Valid prediction for GeneMark_model.11158_t Valid prediction for snap_scaffold_3-snap.1277-T1 Valid prediction for GeneMark_model.11148_t Valid prediction for GlimmerHMM_glimmerT_6739-T1 Valid prediction for GeneMark_model.11182_t Valid prediction for snap_scaffold_3-snap.1220-T1 Valid prediction for GeneMark_model.11163_t Valid prediction for GeneMark_model.11154_t Valid prediction for GlimmerHMM_glimmerT_6768-T1 Valid prediction for GeneMark_model.11152_t Valid prediction for snap_scaffold_3-snap.1282-T1 Valid prediction for GlimmerHMM_glimmerT_6765-T1 Valid prediction for snap_scaffold_3-snap.1275-T1 Valid prediction for GlimmerHMM_glimmerT_6741-T1 Valid prediction for snap_scaffold_3-snap.1223-T1 Valid prediction for GlimmerHMM_glimmerT_6747-T1 Valid prediction for GlimmerHMM_glimmerT_6746-T1 Valid prediction for GeneMark_model.11185_t Valid prediction for Augustus_model.g4424.t1 Valid prediction for snap_scaffold_3-snap.1221-T1 Valid prediction for snap_scaffold_3-snap.1232-T1 Valid prediction for GeneMark_model.11183_t Valid prediction for snap_scaffold_3-snap.1230-T1 Valid prediction for GeneMark_model.11150_t Valid prediction for snap_scaffold_3-snap.1225-T1 Valid prediction for Augustus_model.g4414.t1 Valid prediction for GlimmerHMM_glimmerT_6766-T1 Couldn't classify 25572, 26189 Sorry, prediction pasa_asmbl_40049.p1 fails validation. (GCA) AA 25572-26189 AA AAA Valid prediction for GlimmerHMM_glimmerT_6748-T1 Valid prediction for snap_scaffold_3-snap.1281-T1 Valid prediction for snap_scaffold_3-snap.1227-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.11172_t Valid prediction for GlimmerHMM_glimmerT_6749-T1 Valid prediction for snap_scaffold_3-snap.1229-T1 Valid prediction for snap_scaffold_3-snap.1272-T1 Valid prediction for GlimmerHMM_glimmerT_6740-T1 Valid prediction for CodingQuarry_transcript_46066-T1 Valid prediction for GlimmerHMM_glimmerT_6761-T1 Couldn't classify 254016, 254289 Couldn't classify 254393, 254511 Sorry, prediction pasa_asmbl_38845.p1 fails validation. (CCC) CA 254016-254289 GT AGG (AAC) AG 254393-254511 GA CAG Valid prediction for CodingQuarry_transcript_46065-T1 Valid prediction for HiQ_model.g4422.t1 Valid prediction for GeneMark_model.11157_t Valid prediction for GlimmerHMM_glimmerT_6762-T1 Couldn't classify 221837, 222869 Sorry, prediction pasa_asmbl_39708.p1 fails validation. (TCA) AA 221837-222869 GT AGG (GAT) AG 222968-223330 GT AGG (GTT) AG 223437-223735 AA AAA -recovered pasa_asmbl_39708.p1, terminal, 223437, 223735 -recovered pasa_asmbl_39708.p1, internal, 222968, 223330 Valid prediction for snap_scaffold_3-snap.1268-T1 Valid prediction for GlimmerHMM_glimmerT_6745-T1 Couldn't classify 17129, 17213 Couldn't classify 19029, 19087 Sorry, prediction pasa_asmbl_38896.p1 fails validation. (TTG) CT 17129-17213 GT AGG (ACA) AG 17370-17561 GT AGG (ATG) AG 18065-18337 GT TGG (CTG) AG 18706-18897 GT GAG (ACC) AG 19029-19087 AG AGA add_exon() Sorry, pasa_asmbl_38896.p1 18065-18337-initial-1 is invalid. -recovered pasa_asmbl_38896.p1, initial, 18065, 18337 -recovered pasa_asmbl_38896.p1, internal, 17370, 17561 -recovered pasa_asmbl_38896.p1, internal, 18065, 18337 -recovered pasa_asmbl_38896.p1, internal, 18706, 18897 Valid prediction for GeneMark_model.11181_t Valid prediction for GeneMark_model.11171_t Valid prediction for snap_scaffold_3-snap.1228-T1 Valid prediction for GeneMark_model.11164_t Valid prediction for CodingQuarry_transcript_46070-T1 Valid prediction for snap_scaffold_3-snap.1245-T1 Valid prediction for pasa_asmbl_38833.p1 Valid prediction for snap_scaffold_3-snap.1236-T1 Valid prediction for GlimmerHMM_glimmerT_6756-T1 Couldn't classify 128900, 128943 Sorry, prediction pasa_asmbl_38863.p1 fails validation. (ATG) AA 115249-115378 GT AGG (AGC) AG 115495-115776 GT AGG (AGC) AG 115861-116139 GT AGG (ATA) AG 116225-116512 GT AGG (AGC) AG 116620-116898 GT AGG (AAT) AG 117002-117283 GT CGG (AAC) AG 117392-117670 GT AGG (AGG) AG 117792-118079 GT AGG (AAC) AG 118201-118488 GT AGG (AAC) AG 118652-118942 GT TGG (AGC) AG 119171-119458 GT AGG (AGA) AG 119538-119654 GT GAG (AGG) AG 120077-120362 GT AAG (GAC) AG 120463-120646 GT AGG (GAA) AG 120841-120924 GT AGG (CCT) AG 121057-121324 GT GGG (AAG) AG 121440-121475 GT CGG (TCC) AG 124057-124128 GT AGG (ATT) AG 124510-124584 GT AGG (CCA) AG 124765-124836 GT AGG (AAT) AG 125083-125169 GT AGG (ATG) AG 125525-125671 GT AGG (TCC) AG 125895-126488 GT AGG (TGC) AG 127004-127114 GT AGG (AAA) AG 128900-128943 GG GAG -recovered pasa_asmbl_38863.p1, initial, 115249, 115378 add_exon() Sorry, pasa_asmbl_38863.p1 125525-125671-initial-1 is invalid. -recovered pasa_asmbl_38863.p1, initial, 125525, 125671 add_exon() Sorry, pasa_asmbl_38863.p1 115495-115776-terminal-1 is invalid. -recovered pasa_asmbl_38863.p1, terminal, 115495, 115776 add_exon() Sorry, pasa_asmbl_38863.p1 115861-116139-terminal-1 is invalid. -recovered pasa_asmbl_38863.p1, terminal, 115861, 116139 -recovered pasa_asmbl_38863.p1, internal, 115495, 115776 -recovered pasa_asmbl_38863.p1, internal, 115861, 116139 -recovered pasa_asmbl_38863.p1, internal, 116225, 116512 -recovered pasa_asmbl_38863.p1, internal, 116620, 116898 -recovered pasa_asmbl_38863.p1, internal, 117002, 117283 -recovered pasa_asmbl_38863.p1, internal, 117392, 117670 -recovered pasa_asmbl_38863.p1, internal, 117792, 118079 -recovered pasa_asmbl_38863.p1, internal, 118201, 118488 -recovered pasa_asmbl_38863.p1, internal, 118652, 118942 -recovered pasa_asmbl_38863.p1, internal, 119171, 119458 -recovered pasa_asmbl_38863.p1, internal, 119538, 119654 -recovered pasa_asmbl_38863.p1, internal, 120077, 120362 -recovered pasa_asmbl_38863.p1, internal, 120463, 120646 -recovered pasa_asmbl_38863.p1, internal, 120841, 120924 -recovered pasa_asmbl_38863.p1, internal, 121057, 121324 -recovered pasa_asmbl_38863.p1, internal, 121440, 121475 -recovered pasa_asmbl_38863.p1, internal, 124057, 124128 -recovered pasa_asmbl_38863.p1, internal, 124510, 124584 -recovered pasa_asmbl_38863.p1, internal, 124765, 124836 -recovered pasa_asmbl_38863.p1, internal, 125083, 125169 -recovered pasa_asmbl_38863.p1, internal, 125525, 125671 -recovered pasa_asmbl_38863.p1, internal, 125895, 126488 -recovered pasa_asmbl_38863.p1, internal, 127004, 127114 Valid prediction for snap_scaffold_3-snap.1243-T1 Couldn't classify 19306, 19510 Sorry, prediction pasa_asmbl_38894.p1 fails validation. (TGG) AC 19306-19510 GT CAG (TCT) AG 19673-19789 GT CGG (GAG) AG 19961-20125 GT AGG (ACA) AG 20253-20408 GT AGG (ACC) AG 20540-20653 GT CCG (CCC) AG 20765-21052 GT AGG (CGA) AG 21202-21389 GT TGG (ATT) AG 22186-22273 GT CAG (CCA) AG 22440-22619 GT AGG (GTT) AG 22750-22839 GT AGG (CCA) AG 22982-23173 GT GGG (GTC) AG 23272-23361 GT TCG (AGC) AG 23723-23819 GT AAG (CAG) AG 23926-24298 GT AGG (ATG) AG 24568-24706 GT CGG (TCC) AG 24899-25060 GT CAG (AAT) AG 25703-25828 GT ACG (ATG) AG 25965-26071 GT AGG (GGC) AG 26277-26396 GT TGG (AAC) AG 26484-26552 AG AGA -recovered pasa_asmbl_38894.p1, initial, 24568, 24706 -recovered pasa_asmbl_38894.p1, initial, 25965, 26071 -recovered pasa_asmbl_38894.p1, terminal, 26484, 26552 -recovered pasa_asmbl_38894.p1, internal, 19673, 19789 -recovered pasa_asmbl_38894.p1, internal, 19961, 20125 -recovered pasa_asmbl_38894.p1, internal, 20253, 20408 -recovered pasa_asmbl_38894.p1, internal, 20540, 20653 -recovered pasa_asmbl_38894.p1, internal, 20765, 21052 -recovered pasa_asmbl_38894.p1, internal, 21202, 21389 -recovered pasa_asmbl_38894.p1, internal, 22186, 22273 -recovered pasa_asmbl_38894.p1, internal, 22440, 22619 -recovered pasa_asmbl_38894.p1, internal, 22750, 22839 -recovered pasa_asmbl_38894.p1, internal, 22982, 23173 -recovered pasa_asmbl_38894.p1, internal, 23272, 23361 -recovered pasa_asmbl_38894.p1, internal, 23723, 23819 -recovered pasa_asmbl_38894.p1, internal, 23926, 24298 -recovered pasa_asmbl_38894.p1, internal, 24568, 24706 -recovered pasa_asmbl_38894.p1, internal, 24899, 25060 -recovered pasa_asmbl_38894.p1, internal, 25703, 25828 -recovered pasa_asmbl_38894.p1, internal, 25965, 26071 -recovered pasa_asmbl_38894.p1, internal, 26277, 26396 Valid prediction for CodingQuarry_transcript_46076-T1 Valid prediction for GeneMark_model.11175_t Valid prediction for pasa_asmbl_38835.p1 Valid prediction for pasa_asmbl_38888.p1 Couldn't classify 105748, 105793 Couldn't classify 106817, 106878 Sorry, prediction pasa_asmbl_38873.p1 fails validation. (GCT) AA 105748-105793 GT AGG (TAC) AG 106356-106634 GT GGG (AAA) AG 106817-106878 GC AAG -recovered pasa_asmbl_38873.p1, internal, 106356, 106634 -recovered pasa_asmbl_38873.p1, internal, 106817, 106878 Valid prediction for Augustus_model.g4415.t1 Valid prediction for snap_scaffold_3-snap.1267-T1 Valid prediction for snap_scaffold_3-snap.1256-T1 Valid prediction for snap_scaffold_3-snap.1222-T1 Couldn't classify 216828, 221882 Couldn't classify 221925, 222869 Sorry, prediction CodingQuarry_transcript_46068-T1 fails validation. (ATG) GC 212774-213023 GT TGG (AGC) AG 213130-213432 GT TGG (ACT) AG 213536-214120 GT ATG (GTC) AG 214208-214513 GT CGG (ACA) AG 214639-214938 GT CGG (TTG) AG 215049-215624 GT AGG (ATA) AG 215723-216028 GT TGG (AAA) AG 216134-216727 GT GGG (TTC) AG 216828-221882 CT ACC (CTG) AC 221925-222869 GT AGG (GAT) AG 222968-223330 GT AGG (GTT) AG 223437-223735 AA AAA -recovered CodingQuarry_transcript_46068-T1, initial, 212774, 213023 -recovered CodingQuarry_transcript_46068-T1, terminal, 223437, 223735 -recovered CodingQuarry_transcript_46068-T1, internal, 213130, 213432 -recovered CodingQuarry_transcript_46068-T1, internal, 213536, 214120 -recovered CodingQuarry_transcript_46068-T1, internal, 214208, 214513 -recovered CodingQuarry_transcript_46068-T1, internal, 214639, 214938 -recovered CodingQuarry_transcript_46068-T1, internal, 215049, 215624 -recovered CodingQuarry_transcript_46068-T1, internal, 215723, 216028 -recovered CodingQuarry_transcript_46068-T1, internal, 216134, 216727 -recovered CodingQuarry_transcript_46068-T1, internal, 222968, 223330 Valid prediction for snap_scaffold_3-snap.1264-T1 Couldn't classify 93212, 93212 Sorry, prediction CodingQuarry_transcript_46071-T1 fails validation. (ATG) AA 75475-75565 GT TGG (GTT) AG 76025-76228 GT AGG (CGG) AG 76416-76703 GT GGG (GTG) AG 77243-77328 GT GGG (AAA) AG 77412-77638 GT AGG (GCC) AG 77742-77997 GT AGG (GCA) AG 80673-80738 GT CTG (GCT) AG 80854-81112 GT AGG (TGT) AG 81217-81283 GT CAG (CTT) AG 81390-81611 GT AGG (ATA) AG 81706-81848 GT AGG (AGG) AG 81934-82103 GT AGG (GAA) AG 82236-82466 GT AGG (ATC) AG 82607-82848 GT AGG (GTC) AG 82955-83175 GT TGG (GAC) AG 83264-83428 GT AGG (CTA) AG 83547-83715 GT AAG (GAT) AG 83793-85492 GT AGG (GCA) AG 85622-85903 GT AGG (GTG) AG 85994-86260 GT ATG (TGC) AG 86417-86689 GT AAG (CCA) AG 86787-87050 GT AAG (AAA) AG 87162-87422 GT AGG (GTG) AG 87532-87792 GT AGG (CTG) AG 87879-88142 GT AAG (CCA) AG 88266-88526 GT GGG (CTC) AG 88683-88943 GT CTG (CTA) AG 89041-89301 GT AGG (CTC) AG 89393-89534 GT AGG (ATA) AG 89641-89809 GT CTG (GTT) AG 89892-90123 GT CAG (TCC) AG 90231-90515 GT AGG (TTT) AG 90601-90726 GT AGG (ATG) AG 90852-91040 GT TGG (TAT) AG 92160-92204 GT AGG (AAG) AG 92978-93071 GT TGG (AGT) AG 93212-93212 GT GAG -recovered CodingQuarry_transcript_46071-T1, initial, 75475, 75565 add_exon() Sorry, CodingQuarry_transcript_46071-T1 90852-91040-initial-1 is invalid. -recovered CodingQuarry_transcript_46071-T1, initial, 90852, 91040 add_exon() Sorry, CodingQuarry_transcript_46071-T1 82607-82848-terminal-2 is invalid. -recovered CodingQuarry_transcript_46071-T1, terminal, 82607, 82848 -recovered CodingQuarry_transcript_46071-T1, internal, 76025, 76228 -recovered CodingQuarry_transcript_46071-T1, internal, 76416, 76703 -recovered CodingQuarry_transcript_46071-T1, internal, 77243, 77328 -recovered CodingQuarry_transcript_46071-T1, internal, 77412, 77638 -recovered CodingQuarry_transcript_46071-T1, internal, 77742, 77997 -recovered CodingQuarry_transcript_46071-T1, internal, 80673, 80738 -recovered CodingQuarry_transcript_46071-T1, internal, 80854, 81112 -recovered CodingQuarry_transcript_46071-T1, internal, 81217, 81283 -recovered CodingQuarry_transcript_46071-T1, internal, 81390, 81611 -recovered CodingQuarry_transcript_46071-T1, internal, 81706, 81848 -recovered CodingQuarry_transcript_46071-T1, internal, 81934, 82103 -recovered CodingQuarry_transcript_46071-T1, internal, 82236, 82466 -recovered CodingQuarry_transcript_46071-T1, internal, 82607, 82848 -recovered CodingQuarry_transcript_46071-T1, internal, 82955, 83175 -recovered CodingQuarry_transcript_46071-T1, internal, 83264, 83428 -recovered CodingQuarry_transcript_46071-T1, internal, 83547, 83715 -recovered CodingQuarry_transcript_46071-T1, internal, 83793, 85492 -recovered CodingQuarry_transcript_46071-T1, internal, 85622, 85903 -recovered CodingQuarry_transcript_46071-T1, internal, 85994, 86260 -recovered CodingQuarry_transcript_46071-T1, internal, 86417, 86689 -recovered CodingQuarry_transcript_46071-T1, internal, 86787, 87050 -recovered CodingQuarry_transcript_46071-T1, internal, 87162, 87422 -recovered CodingQuarry_transcript_46071-T1, internal, 87532, 87792 -recovered CodingQuarry_transcript_46071-T1, internal, 87879, 88142 -recovered CodingQuarry_transcript_46071-T1, internal, 88266, 88526 -recovered CodingQuarry_transcript_46071-T1, internal, 88683, 88943 -recovered CodingQuarry_transcript_46071-T1, internal, 89041, 89301 -recovered CodingQuarry_transcript_46071-T1, internal, 89393, 89534 -recovered CodingQuarry_transcript_46071-T1, internal, 89641, 89809 -recovered CodingQuarry_transcript_46071-T1, internal, 89892, 90123 -recovered CodingQuarry_transcript_46071-T1, internal, 90231, 90515 -recovered CodingQuarry_transcript_46071-T1, internal, 90601, 90726 -recovered CodingQuarry_transcript_46071-T1, internal, 90852, 91040 -recovered CodingQuarry_transcript_46071-T1, internal, 92160, 92204 -recovered CodingQuarry_transcript_46071-T1, internal, 92978, 93071 -recovered CodingQuarry_transcript_46071-T1, internal, 93212, 93212 Valid prediction for snap_scaffold_3-snap.1233-T1 Valid prediction for snap_scaffold_3-snap.1237-T1 Valid prediction for GlimmerHMM_glimmerT_6753-T1 Valid prediction for GeneMark_model.11151_t Valid prediction for CodingQuarry_transcript_46064-T1 Valid prediction for snap_scaffold_3-snap.1274-T1 Valid prediction for snap_scaffold_3-snap.1280-T1 Valid prediction for snap_scaffold_3-snap.1285-T1 Valid prediction for GlimmerHMM_glimmerT_6760-T1 Valid prediction for Augustus_model.g4419.t1 Valid prediction for GeneMark_model.11149_t Valid prediction for snap_scaffold_3-snap.1255-T1 Valid prediction for GeneMark_model.11174_t Couldn't classify 110415, 110589 Couldn't classify 111420, 111547 Sorry, prediction pasa_asmbl_38871.p1 fails validation. (TTT) CT 110415-110589 GT AGG (AAC) AG 110677-110955 GT AGG (AAC) AG 111053-111331 GT CGG (ATC) AG 111420-111547 AA AGA -recovered pasa_asmbl_38871.p1, internal, 110677, 110955 -recovered pasa_asmbl_38871.p1, internal, 111053, 111331 Valid prediction for GlimmerHMM_glimmerT_6763-T1 Valid prediction for snap_scaffold_3-snap.1242-T1 Valid prediction for GlimmerHMM_glimmerT_6767-T1 Valid prediction for snap_scaffold_3-snap.1226-T1 Valid prediction for CodingQuarry_transcript_46061-T1 Couldn't classify 112210, 112468 Couldn't classify 112578, 112840 Sorry, prediction pasa_asmbl_38868.p1 fails validation. (CCT) CT 112210-112468 GT AGG (AGC) AG 112578-112840 AC CTA Valid prediction for snap_scaffold_3-snap.1246-T1 Valid prediction for CodingQuarry_transcript_46075-T1 Valid prediction for GeneMark_model.11159_t Valid prediction for snap_scaffold_3-snap.1251-T1 Valid prediction for snap_scaffold_3-snap.1248-T1 Valid prediction for snap_scaffold_3-snap.1269-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_3-snap.1270-T1 Valid prediction for snap_scaffold_3-snap.1247-T1 Valid prediction for CodingQuarry_transcript_46072-T1 Couldn't classify 8709, 8755 Sorry, prediction pasa_asmbl_38898.p1 fails validation. (ATG) AA 5188-5320 GT AGG (ATG) AG 5570-5695 GT GGG (CTG) AG 5952-6089 GT AAG (ACC) AG 6242-6373 GT CGG (CGG) AG 6496-6633 GT AAG (ACC) AG 7417-7575 GT GGG (GCA) AG 7799-7996 GT GGG (AGG) AG 8123-8305 GT CGG (TCA) AG 8709-8755 TT AGT -recovered pasa_asmbl_38898.p1, initial, 5188, 5320 add_exon() Sorry, pasa_asmbl_38898.p1 5570-5695-initial-1 is invalid. -recovered pasa_asmbl_38898.p1, initial, 5570, 5695 -recovered pasa_asmbl_38898.p1, internal, 5570, 5695 -recovered pasa_asmbl_38898.p1, internal, 5952, 6089 -recovered pasa_asmbl_38898.p1, internal, 6242, 6373 -recovered pasa_asmbl_38898.p1, internal, 6496, 6633 -recovered pasa_asmbl_38898.p1, internal, 7417, 7575 -recovered pasa_asmbl_38898.p1, internal, 7799, 7996 -recovered pasa_asmbl_38898.p1, internal, 8123, 8305 Couldn't classify 181748, 186582 Sorry, prediction pasa_asmbl_38857.p1 fails validation. (ATG) AG 140904-141030 GT AGG (CTC) AG 141444-141583 GT CTG (GAT) AG 141672-141798 GT AGG (AAC) AG 141888-142154 GT AGG (GTA) AG 142264-142530 GT AGG (AGG) AG 142642-142908 GT GGG (AGC) AG 142991-143130 GT CTG (GAC) AG 143236-143362 GT AGG (CAC) AG 144151-144293 GT GAG (GTG) AG 145592-145715 GT CGG (AGC) AG 145979-146245 GT ACG (CTC) AG 146358-146455 GT AGG (GTC) AG 146560-146728 GT CGG (AGG) AG 146814-147080 GT TGG (AAC) AG 147254-147520 GT CGG (AGA) AG 147645-147923 GT AGG (AGG) AG 148046-148454 GT AGG (ATA) AG 148549-148673 GC AGG (AGA) AG 148767-149033 GT AGG (CTA) AG 149211-149480 GT TGG (ACA) AG 149590-149889 GT TGG (ATG) AG 149975-150277 GT TGG (AGA) AG 150397-150584 GT AGG (ATC) AG 150679-150793 GT CTG (TTG) AG 150900-151184 GT CGG (CAT) AG 151270-151421 GT AGG (GTG) AG 151531-151678 GT CAG (CTG) AG 151813-151990 GT AAG (GTT) AG 152092-152213 GT GGG (AGG) AG 152297-152584 GT TGG (ATA) AG 152712-153008 GT TGG (ACA) AG 153136-153322 GT AGG (AGT) AG 153469-153584 GT TGG (ATC) AG 153688-153987 GT CAG (ACC) AG 154136-154435 GT CAG (CTA) AG 154546-154651 GT AGG (GTA) AG 154765-154961 GT AGG (GTC) AG 155091-155396 GT CTG (GCA) AG 155506-155784 GT TGG (GCC) AG 155873-156172 GT ACG (AAC) AG 156279-156581 GT TGG (AAC) AG 156761-157291 GT AGG (ATA) AG 157436-157738 GT CGG (ATC) AG 157865-158164 GT TCG (TGC) AG 158297-158593 GT AGG (AAA) AG 158705-158989 GT GGG (ATG) AG 159074-159367 GT AGG (GTC) AG 159465-159764 GT AGG (TGG) AG 159910-160218 GT TGG (ATC) AG 160340-160542 GT GGG (GTG) AG 160665-161094 GT AAG (CTC) AG 161211-161519 GT CGG (TGG) AG 161684-161865 GT AGG (ATT) AG 161971-162100 GT TGG (ACG) AG 162196-162495 GT CTG (ACC) AG 162600-162917 GT ATG (GCC) AG 163002-163298 GT TGG (GGC) AG 163453-163752 GT CAG (CTG) AG 163848-164162 GT TGG (CTC) AG 164367-164581 GT AGG (GCC) AG 164724-164874 GT AAG (TTC) AG 165030-165311 GT GGG (ATG) AG 165512-165814 GT CTG (CGG) AG 165910-166212 GT TGG (AAC) AG 166347-166628 GT TGG (ATC) AG 166766-167065 GT CAG (AGG) AG 167181-167486 GT CGG (TGA) AG 167574-167882 GT TGG (AAC) AG 168017-168298 GT CGG (ACA) AG 168410-168709 GT CTG (TCC) AG 168822-169115 GT GGG (TGG) AG 169247-172204 GT TGG (AAC) AG 172297-172623 GT TGG (AGG) AG 172742-173026 GT TGG (ATA) AG 173174-173473 GT CAG (GTG) AG 173630-173932 GT GCG (TGC) AG 174033-174308 GT GGG (ACA) AG 174471-174770 GT TGG (ACC) AG 174890-175192 GT TGG (ATC) AG 175298-175597 GT TGG (TTC) AG 175773-176060 GT CGG (ACA) AG 176213-176515 GT CGG (ATG) AG 176618-176920 GT ATG (ACC) AG 177054-177359 GT AAG (TTG) AG 177543-177830 GT AGG (ATT) AG 177926-178216 GT AGG (AAC) AG 178332-178619 GT AGG (TTC) AG 178797-179384 GT TAG (ATG) AG 179521-179625 GT TGG (GAT) AG 179727-179924 GT TGG (ATC) AG 180017-180313 GT TGG (AGC) AG 180575-181162 GT TGG (GCC) AG 181321-181623 GT CTG (ATC) AG 181748-186582 AG AGA -recovered pasa_asmbl_38857.p1, initial, 140904, 141030 add_exon() Sorry, pasa_asmbl_38857.p1 149975-150277-initial-1 is invalid. -recovered pasa_asmbl_38857.p1, initial, 149975, 150277 add_exon() Sorry, pasa_asmbl_38857.p1 159074-159367-initial-1 is invalid. -recovered pasa_asmbl_38857.p1, initial, 159074, 159367 add_exon() Sorry, pasa_asmbl_38857.p1 165512-165814-initial-1 is invalid. -recovered pasa_asmbl_38857.p1, initial, 165512, 165814 add_exon() Sorry, pasa_asmbl_38857.p1 176618-176920-initial-1 is invalid. -recovered pasa_asmbl_38857.p1, initial, 176618, 176920 add_exon() Sorry, pasa_asmbl_38857.p1 179521-179625-initial-1 is invalid. -recovered pasa_asmbl_38857.p1, initial, 179521, 179625 add_exon() Sorry, pasa_asmbl_38857.p1 142264-142530-terminal-1 is invalid. -recovered pasa_asmbl_38857.p1, terminal, 142264, 142530 add_exon() Sorry, pasa_asmbl_38857.p1 156761-157291-terminal-1 is invalid. -recovered pasa_asmbl_38857.p1, terminal, 156761, 157291 add_exon() Sorry, pasa_asmbl_38857.p1 160665-161094-terminal-3 is invalid. -recovered pasa_asmbl_38857.p1, terminal, 160665, 161094 add_exon() Sorry, pasa_asmbl_38857.p1 177054-177359-terminal-1 is invalid. -recovered pasa_asmbl_38857.p1, terminal, 177054, 177359 add_exon() Sorry, pasa_asmbl_38857.p1 177543-177830-terminal-1 is invalid. -recovered pasa_asmbl_38857.p1, terminal, 177543, 177830 add_exon() Sorry, pasa_asmbl_38857.p1 178332-178619-terminal-1 is invalid. -recovered pasa_asmbl_38857.p1, terminal, 178332, 178619 -recovered pasa_asmbl_38857.p1, internal, 140904, 141030 -recovered pasa_asmbl_38857.p1, internal, 141444, 141583 -recovered pasa_asmbl_38857.p1, internal, 141672, 141798 -recovered pasa_asmbl_38857.p1, internal, 141888, 142154 -recovered pasa_asmbl_38857.p1, internal, 142264, 142530 -recovered pasa_asmbl_38857.p1, internal, 142642, 142908 -recovered pasa_asmbl_38857.p1, internal, 142991, 143130 -recovered pasa_asmbl_38857.p1, internal, 143236, 143362 -recovered pasa_asmbl_38857.p1, internal, 144151, 144293 -recovered pasa_asmbl_38857.p1, internal, 145592, 145715 -recovered pasa_asmbl_38857.p1, internal, 145979, 146245 -recovered pasa_asmbl_38857.p1, internal, 146358, 146455 -recovered pasa_asmbl_38857.p1, internal, 146560, 146728 -recovered pasa_asmbl_38857.p1, internal, 146814, 147080 -recovered pasa_asmbl_38857.p1, internal, 147254, 147520 -recovered pasa_asmbl_38857.p1, internal, 147645, 147923 -recovered pasa_asmbl_38857.p1, internal, 148046, 148454 -recovered pasa_asmbl_38857.p1, internal, 148549, 148673 -recovered pasa_asmbl_38857.p1, internal, 148767, 149033 -recovered pasa_asmbl_38857.p1, internal, 149211, 149480 -recovered pasa_asmbl_38857.p1, internal, 149590, 149889 -recovered pasa_asmbl_38857.p1, internal, 149975, 150277 -recovered pasa_asmbl_38857.p1, internal, 150397, 150584 -recovered pasa_asmbl_38857.p1, internal, 150679, 150793 -recovered pasa_asmbl_38857.p1, internal, 150900, 151184 -recovered pasa_asmbl_38857.p1, internal, 151270, 151421 -recovered pasa_asmbl_38857.p1, internal, 151531, 151678 -recovered pasa_asmbl_38857.p1, internal, 151813, 151990 -recovered pasa_asmbl_38857.p1, internal, 152092, 152213 -recovered pasa_asmbl_38857.p1, internal, 152297, 152584 -recovered pasa_asmbl_38857.p1, internal, 152712, 153008 -recovered pasa_asmbl_38857.p1, internal, 153136, 153322 -recovered pasa_asmbl_38857.p1, internal, 153469, 153584 -recovered pasa_asmbl_38857.p1, internal, 153688, 153987 -recovered pasa_asmbl_38857.p1, internal, 154136, 154435 -recovered pasa_asmbl_38857.p1, internal, 154546, 154651 -recovered pasa_asmbl_38857.p1, internal, 154765, 154961 -recovered pasa_asmbl_38857.p1, internal, 155091, 155396 -recovered pasa_asmbl_38857.p1, internal, 155506, 155784 -recovered pasa_asmbl_38857.p1, internal, 155873, 156172 -recovered pasa_asmbl_38857.p1, internal, 156279, 156581 -recovered pasa_asmbl_38857.p1, internal, 156761, 157291 -recovered pasa_asmbl_38857.p1, internal, 157436, 157738 -recovered pasa_asmbl_38857.p1, internal, 157865, 158164 -recovered pasa_asmbl_38857.p1, internal, 158297, 158593 -recovered pasa_asmbl_38857.p1, internal, 158705, 158989 -recovered pasa_asmbl_38857.p1, internal, 159074, 159367 -recovered pasa_asmbl_38857.p1, internal, 159465, 159764 -recovered pasa_asmbl_38857.p1, internal, 159910, 160218 -recovered pasa_asmbl_38857.p1, internal, 160340, 160542 -recovered pasa_asmbl_38857.p1, internal, 160665, 161094 -recovered pasa_asmbl_38857.p1, internal, 161211, 161519 -recovered pasa_asmbl_38857.p1, internal, 161684, 161865 -recovered pasa_asmbl_38857.p1, internal, 161971, 162100 -recovered pasa_asmbl_38857.p1, internal, 162196, 162495 -recovered pasa_asmbl_38857.p1, internal, 162600, 162917 -recovered pasa_asmbl_38857.p1, internal, 163002, 163298 -recovered pasa_asmbl_38857.p1, internal, 163453, 163752 -recovered pasa_asmbl_38857.p1, internal, 163848, 164162 -recovered pasa_asmbl_38857.p1, internal, 164367, 164581 -recovered pasa_asmbl_38857.p1, internal, 164724, 164874 -recovered pasa_asmbl_38857.p1, internal, 165030, 165311 -recovered pasa_asmbl_38857.p1, internal, 165512, 165814 -recovered pasa_asmbl_38857.p1, internal, 165910, 166212 -recovered pasa_asmbl_38857.p1, internal, 166347, 166628 -recovered pasa_asmbl_38857.p1, internal, 166766, 167065 -recovered pasa_asmbl_38857.p1, internal, 167181, 167486 -recovered pasa_asmbl_38857.p1, internal, 167574, 167882 -recovered pasa_asmbl_38857.p1, internal, 168017, 168298 -recovered pasa_asmbl_38857.p1, internal, 168410, 168709 -recovered pasa_asmbl_38857.p1, internal, 168822, 169115 -recovered pasa_asmbl_38857.p1, internal, 169247, 172204 -recovered pasa_asmbl_38857.p1, internal, 172297, 172623 -recovered pasa_asmbl_38857.p1, internal, 172742, 173026 -recovered pasa_asmbl_38857.p1, internal, 173174, 173473 -recovered pasa_asmbl_38857.p1, internal, 173630, 173932 -recovered pasa_asmbl_38857.p1, internal, 174033, 174308 -recovered pasa_asmbl_38857.p1, internal, 174471, 174770 -recovered pasa_asmbl_38857.p1, internal, 174890, 175192 -recovered pasa_asmbl_38857.p1, internal, 175298, 175597 -recovered pasa_asmbl_38857.p1, internal, 175773, 176060 -recovered pasa_asmbl_38857.p1, internal, 176213, 176515 -recovered pasa_asmbl_38857.p1, internal, 176618, 176920 -recovered pasa_asmbl_38857.p1, internal, 177054, 177359 -recovered pasa_asmbl_38857.p1, internal, 177543, 177830 -recovered pasa_asmbl_38857.p1, internal, 177926, 178216 -recovered pasa_asmbl_38857.p1, internal, 178332, 178619 -recovered pasa_asmbl_38857.p1, internal, 178797, 179384 -recovered pasa_asmbl_38857.p1, internal, 179521, 179625 -recovered pasa_asmbl_38857.p1, internal, 179727, 179924 -recovered pasa_asmbl_38857.p1, internal, 180017, 180313 -recovered pasa_asmbl_38857.p1, internal, 180575, 181162 -recovered pasa_asmbl_38857.p1, internal, 181321, 181623 Valid prediction for GeneMark_model.11160_t Couldn't classify 108030, 108241 Sorry, prediction pasa_asmbl_38872.p1 fails validation. (ATG) CA 107239-107380 GT AGG (AGC) AG 107651-107932 GT AGG (AGC) AG 108030-108241 GA GGG -recovered pasa_asmbl_38872.p1, initial, 107239, 107380 -recovered pasa_asmbl_38872.p1, internal, 107651, 107932 Valid prediction for snap_scaffold_3-snap.1253-T1 Valid prediction for snap_scaffold_3-snap.1271-T1 Valid prediction for snap_scaffold_3-snap.1240-T1 Valid prediction for GeneMark_model.11179_t Valid prediction for snap_scaffold_3-snap.1259-T1 Valid prediction for Augustus_model.g4420.t1 Valid prediction for GeneMark_model.11153_t Valid prediction for snap_scaffold_3-snap.1231-T1 Valid prediction for GeneMark_model.11173_t Valid prediction for snap_scaffold_3-snap.1254-T1 Valid prediction for CodingQuarry_transcript_46074-T1 Valid prediction for snap_scaffold_3-snap.1278-T1 Valid prediction for snap_scaffold_3-snap.1261-T1 Valid prediction for pasa_asmbl_38882.p3 Valid prediction for GlimmerHMM_glimmerT_6744-T1 Valid prediction for snap_scaffold_3-snap.1276-T1 Valid prediction for Augustus_model.g4409.t1 Valid prediction for GlimmerHMM_glimmerT_6759-T1 Valid prediction for GeneMark_model.11176_t Valid prediction for CodingQuarry_transcript_46062-T1 Valid prediction for pasa_asmbl_38880.p1 Valid prediction for pasa_asmbl_38841.p2 Valid prediction for GeneMark_model.11168_t Valid prediction for Augustus_model.g4425.t1 Couldn't classify 394939, 394991 Sorry, prediction pasa_asmbl_38824.p1 fails validation. (ATG) TC 387988-388048 GT AGG (AAG) AG 390604-390633 GT GGG (ATG) AG 390809-391264 GT AGG (AAG) AG 391381-391410 GT AGG (ATC) AG 392166-392189 GT AGG (GTG) AG 392306-392389 GT GGG (CTC) AG 393588-393611 GT AGG (ATG) AG 393750-393770 GT AGG (AGG) AG 394743-394862 GT GGG (AAG) AG 394939-394991 GG AGG -recovered pasa_asmbl_38824.p1, initial, 387988, 388048 add_exon() Sorry, pasa_asmbl_38824.p1 390809-391264-initial-1 is invalid. -recovered pasa_asmbl_38824.p1, initial, 390809, 391264 -recovered pasa_asmbl_38824.p1, initial, 393750, 393770 -recovered pasa_asmbl_38824.p1, internal, 390604, 390633 -recovered pasa_asmbl_38824.p1, internal, 390809, 391264 -recovered pasa_asmbl_38824.p1, internal, 391381, 391410 -recovered pasa_asmbl_38824.p1, internal, 392166, 392189 -recovered pasa_asmbl_38824.p1, internal, 392306, 392389 -recovered pasa_asmbl_38824.p1, internal, 393588, 393611 -recovered pasa_asmbl_38824.p1, internal, 393750, 393770 -recovered pasa_asmbl_38824.p1, internal, 394743, 394862 Valid prediction for CodingQuarry_transcript_46060-T1 Valid prediction for pasa_asmbl_38861.p1 Valid prediction for CodingQuarry_transcript_46069-T1 Valid prediction for snap_scaffold_3-snap.1279-T1 Valid prediction for GeneMark_model.11165_t Valid prediction for Augustus_model.g4411.t1 Valid prediction for GeneMark_model.11180_t Valid prediction for GlimmerHMM_glimmerT_6755-T1 Valid prediction for snap_scaffold_3-snap.1265-T1 Valid prediction for snap_scaffold_3-snap.1224-T1 Valid prediction for GeneMark_model.11155_t Valid prediction for snap_scaffold_3-snap.1238-T1 Valid prediction for pasa_asmbl_38875.p1 Valid prediction for GlimmerHMM_glimmerT_6742-T1 Valid prediction for pasa_asmbl_38826.p1 Valid prediction for CodingQuarry_transcript_46067-T1 Valid prediction for GlimmerHMM_glimmerT_6743-T1 Valid prediction for GeneMark_model.11170_t Valid prediction for snap_scaffold_3-snap.1241-T1 Valid prediction for CodingQuarry_transcript_46063-T1 Valid prediction for GeneMark_model.11162_t Valid prediction for GlimmerHMM_glimmerT_6754-T1 Valid prediction for snap_scaffold_3-snap.1250-T1 Valid prediction for GlimmerHMM_glimmerT_6750-T1 Valid prediction for snap_scaffold_3-snap.1239-T1 Couldn't classify 10688, 10817 Couldn't classify 12820, 12953 Sorry, prediction pasa_asmbl_39703.p1 fails validation. (GAC) TA 10688-10817 GT TGG (ATC) AG 10914-11057 GT AGG (GTG) AG 12820-12953 AG GCA -recovered pasa_asmbl_39703.p1, internal, 10914, 11057 Valid prediction for HiQ_model.g4423.t1 Valid prediction for GlimmerHMM_glimmerT_6764-T1 Couldn't classify 400284, 400309 Sorry, prediction pasa_asmbl_38822.p1 fails validation. (CTT) AT 400284-400309 GT AGG (GCT) AG 400426-400547 GT AAG (GTG) AG 400641-401035 CC GAC -recovered pasa_asmbl_38822.p1, terminal, 400641, 401035 -recovered pasa_asmbl_38822.p1, internal, 400426, 400547 Valid prediction for CodingQuarry_transcript_46058-T1 Valid prediction for snap_scaffold_3-snap.1244-T1 Valid prediction for Augustus_model.g4416.t1 Valid prediction for snap_scaffold_3-snap.1249-T1 Couldn't classify 13300, 13414 Couldn't classify 13728, 13795 Sorry, prediction pasa_asmbl_38897.p2 fails validation. (ACA) TG 13300-13414 GT CGG (ATC) AG 13520-13648 GT TGG (CTC) AG 13728-13795 AA ACA -recovered pasa_asmbl_38897.p2, internal, 13520, 13648 Valid prediction for GeneMark_model.11161_t Valid prediction for snap_scaffold_3-snap.1262-T1 Valid prediction for pasa_asmbl_38849.p1 Valid prediction for snap_scaffold_3-snap.1266-T1 Valid prediction for snap_scaffold_3-snap.1258-T1 Valid prediction for Augustus_model.g4417.t1 Valid prediction for HiQ_model.g4418.t1 Valid prediction for GeneMark_model.11169_t Valid prediction for GeneMark_model.11166_t Valid prediction for snap_scaffold_3-snap.1273-T1 Valid prediction for snap_scaffold_3-snap.1283-T1 Valid prediction for GeneMark_model.11177_t Valid prediction for snap_scaffold_3-snap.1234-T1 Valid prediction for GeneMark_model.11167_t Valid prediction for CodingQuarry_transcript_46077-T1 Valid prediction for CodingQuarry_transcript_46073-T1 Valid prediction for snap_scaffold_3-snap.1284-T1 Valid prediction for HiQ_model.g4412.t1 Valid prediction for snap_scaffold_3-snap.1263-T1 Valid prediction for Augustus_model.g4421.t1 Valid prediction for GeneMark_model.11184_t Valid prediction for snap_scaffold_3-snap.1252-T1 Valid prediction for GlimmerHMM_glimmerT_6757-T1 Valid prediction for snap_scaffold_3-snap.1260-T1 Valid prediction for GlimmerHMM_glimmerT_6751-T1 Valid prediction for snap_scaffold_3-snap.1235-T1 Valid prediction for HiQ_model.g4413.t1 Couldn't classify 252320, 252599 Couldn't classify 252834, 253330 Sorry, prediction pasa_asmbl_38846.p1 fails validation. (GTG) CA 252320-252599 GT AGG (AAC) AG 252834-253330 GG CAG Valid prediction for GlimmerHMM_glimmerT_6758-T1 Valid prediction for CodingQuarry_transcript_46059-T1 Couldn't classify 255182, 255410 Couldn't classify 255529, 255773 Sorry, prediction pasa_asmbl_38844.p1 fails validation. (AAC) GA 255182-255410 GT AGG (AAC) AG 255529-255773 AA GGA Valid prediction for snap_scaffold_3-snap.1257-T1 Valid prediction for GlimmerHMM_glimmerT_6752-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11645, rend_intergenic: 8197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 17724, rend_intergenic: 17601 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22852, rend_intergenic: 18021 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 31926, rend_intergenic: 29701 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35025, rend_intergenic: 34287 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47464, rend_intergenic: 43814 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 368580, rend_intergenic: 365979 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 381409, rend_intergenic: 378741 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 395452, rend_intergenic: 386792 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 435454 -exon list size: 1489 building trellis 0.1 0.1 0.2 0.3 0.3 0.4 0.5 0.5 0.6 0.7 0.7 0.8 0.9 0.9 1.0 1.1 1.1 1.2 1.3 1.3 1.4 1.5 1.5 1.6 1.7 1.7 1.8 1.9 1.9 2.0 2.1 2.1 2.2 2.3 2.3 2.4 2.5 2.5 2.6 2.7 2.7 2.8 2.9 3.0 3.0 3.1 3.2 3.2 3.3 3.4 3.4 3.5 3.6 3.6 3.7 3.8 3.8 3.9 4.0 4.0 4.1 4.2 4.2 4.3 4.4 4.4 4.5 4.6 4.6 4.7 4.8 4.8 4.9 5.0 5.0 5.1 5.2 5.2 5.3 5.4 5.4 5.5 5.6 5.6 5.7 5.8 5.8 5.9 6.0 6.0 6.1 6.2 6.2 6.3 6.4 6.4 6.5 6.6 6.6 6.7 6.8 6.8 6.9 7.0 7.0 7.1 7.2 7.2 7.3 7.4 7.4 7.5 7.6 7.6 7.7 7.8 7.8 7.9 8.0 8.0 8.1 8.2 8.2 8.3 8.4 8.5 8.5 8.6 8.7 8.7 8.8 8.9 8.9 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.5 9.5 9.6 9.7 9.7 9.8 9.9 9.9 10.0 10.1 10.1 10.2 10.3 10.3 10.4 10.5 10.5 10.6 10.7 10.7 10.8 10.9 10.9 11.0 11.1 11.1 11.2 11.3 11.3 11.4 11.5 11.5 11.6 11.7 11.7 11.8 11.9 11.9 12.0 12.1 12.1 12.2 12.3 12.3 12.4 12.5 12.5 12.6 12.7 12.7 12.8 12.9 12.9 13.0 13.1 13.1 13.2 13.3 13.3 13.4 13.5 13.5 13.6 13.7 13.7 13.8 13.9 14.0 14.0 14.1 14.2 14.2 14.3 14.4 14.4 14.5 14.6 14.6 14.7 14.8 14.8 14.9 15.0 15.0 15.1 15.2 15.2 15.3 15.4 15.4 15.5 15.6 15.6 15.7 15.8 15.8 15.9 16.0 16.0 16.1 16.2 16.2 16.3 16.4 16.4 16.5 16.6 16.6 16.7 16.8 16.8 16.9 17.0 17.0 17.1 17.2 17.2 17.3 17.4 17.4 17.5 17.6 17.6 17.7 17.8 17.8 17.9 18.0 18.0 18.1 18.2 18.2 18.3 18.4 18.4 18.5 18.6 18.6 18.7 18.8 18.8 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.4 19.5 19.5 19.6 19.7 19.7 19.8 19.9 19.9 20.0 20.1 20.1 20.2 20.3 20.3 20.4 20.5 20.5 20.6 20.7 20.7 20.8 20.9 20.9 21.0 21.1 21.1 21.2 21.3 21.3 21.4 21.5 21.5 21.6 21.7 21.7 21.8 21.9 21.9 22.0 22.1 22.1 22.2 22.3 22.3 22.4 22.5 22.5 22.6 22.7 22.7 22.8 22.9 22.9 23.0 23.1 23.1 23.2 23.3 23.3 23.4 23.5 23.5 23.6 23.7 23.7 23.8 23.9 23.9 24.0 24.1 24.1 24.2 24.3 24.3 24.4 24.5 24.5 24.6 24.7 24.7 24.8 24.9 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.4 25.5 25.6 25.6 25.7 25.8 25.8 25.9 26.0 26.0 26.1 26.2 26.2 26.3 26.4 26.4 26.5 26.6 26.6 26.7 26.8 26.8 26.9 27.0 27.0 27.1 27.2 27.2 27.3 27.4 27.4 27.5 27.6 27.6 27.7 27.8 27.8 27.9 28.0 28.0 28.1 28.2 28.2 28.3 28.4 28.4 28.5 28.6 28.6 28.7 28.8 28.8 28.9 29.0 29.0 29.1 29.2 29.2 29.3 29.4 29.4 29.5 29.6 29.6 29.7 29.8 29.8 29.9 30.0 30.0 30.1 30.2 30.2 30.3 30.4 30.4 30.5 30.6 30.7 30.7 30.8 30.9 30.9 31.0 31.1 31.1 31.2 31.3 31.3 31.4 31.5 31.5 31.6 31.7 31.7 31.8 31.9 31.9 32.0 32.1 32.1 32.2 32.3 32.3 32.4 32.5 32.5 32.6 32.7 32.7 32.8 32.9 32.9 33.0 33.1 33.1 33.2 33.3 33.3 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.9 33.9 34.0 34.1 34.1 34.2 34.3 34.3 34.4 34.5 34.5 34.6 34.7 34.7 34.8 34.9 34.9 35.0 35.1 35.1 35.2 35.3 35.3 35.4 35.5 35.5 35.6 35.7 35.7 35.8 35.9 35.9 36.0 36.1 36.2 36.2 36.3 36.4 36.4 36.5 36.6 36.6 36.7 36.8 36.8 36.9 37.0 37.0 37.1 37.2 37.2 37.3 37.4 37.4 37.5 37.6 37.6 37.7 37.8 37.8 37.9 38.0 38.0 38.1 38.2 38.2 38.3 38.4 38.4 38.5 38.6 38.6 38.7 38.8 38.8 38.9 39.0 39.0 39.1 39.2 39.2 39.3 39.4 39.4 39.5 39.6 39.6 39.7 39.8 39.8 39.9 40.0 40.0 40.1 40.2 40.2 40.3 40.4 40.4 40.5 40.6 40.6 40.7 40.8 40.8 40.9 41.0 41.0 41.1 41.2 41.2 41.3 41.4 41.4 41.5 41.6 41.6 41.7 41.8 41.9 41.9 42.0 42.1 42.1 42.2 42.3 42.3 42.4 42.5 42.5 42.6 42.7 42.7 42.8 42.9 42.9 43.0 43.1 43.1 43.2 43.3 43.3 43.4 43.5 43.5 43.6 43.7 43.7 43.8 43.9 43.9 44.0 44.1 44.1 44.2 44.3 44.3 44.4 44.5 44.5 44.6 44.7 44.7 44.8 44.9 44.9 45.0 45.1 45.1 45.2 45.3 45.3 45.4 45.5 45.5 45.6 45.7 45.7 45.8 45.9 45.9 46.0 46.1 46.1 46.2 46.3 46.3 46.4 46.5 46.5 46.6 46.7 46.7 46.8 46.9 46.9 47.0 47.1 47.1 47.2 47.3 47.4 47.4 47.5 47.6 47.6 47.7 47.8 47.8 47.9 48.0 48.0 48.1 48.2 48.2 48.3 48.4 48.4 48.5 48.6 48.6 48.7 48.8 48.8 48.9 49.0 49.0 49.1 49.2 49.2 49.3 49.4 49.4 49.5 49.6 49.6 49.7 49.8 49.8 49.9 50.0 50.0 50.1 50.2 50.2 50.3 50.4 50.4 50.5 50.6 50.6 50.7 50.8 50.8 50.9 51.0 51.0 51.1 51.2 51.2 51.3 51.4 51.4 51.5 51.6 51.6 51.7 51.8 51.8 51.9 52.0 52.0 52.1 52.2 52.2 52.3 52.4 52.4 52.5 52.6 52.6 52.7 52.8 52.9 52.9 53.0 53.1 53.1 53.2 53.3 53.3 53.4 53.5 53.5 53.6 53.7 53.7 53.8 53.9 53.9 54.0 54.1 54.1 54.2 54.3 54.3 54.4 54.5 54.5 54.6 54.7 54.7 54.8 54.9 54.9 55.0 55.1 55.1 55.2 55.3 55.3 55.4 55.5 55.5 55.6 55.7 55.7 55.8 55.9 55.9 56.0 56.1 56.1 56.2 56.3 56.3 56.4 56.5 56.5 56.6 56.7 56.7 56.8 56.9 56.9 57.0 57.1 57.1 57.2 57.3 57.3 57.4 57.5 57.5 57.6 57.7 57.7 57.8 57.9 57.9 58.0 58.1 58.1 58.2 58.3 58.4 58.4 58.5 58.6 58.6 58.7 58.8 58.8 58.9 59.0 59.0 59.1 59.2 59.2 59.3 59.4 59.4 59.5 59.6 59.6 59.7 59.8 59.8 59.9 60.0 60.0 60.1 60.2 60.2 60.3 60.4 60.4 60.5 60.6 60.6 60.7 60.8 60.8 60.9 61.0 61.0 61.1 61.2 61.2 61.3 61.4 61.4 61.5 61.6 61.6 61.7 61.8 61.8 61.9 62.0 62.0 62.1 62.2 62.2 62.3 62.4 62.4 62.5 62.6 62.6 62.7 62.8 62.8 62.9 63.0 63.0 63.1 63.2 63.2 63.3 63.4 63.4 63.5 63.6 63.6 63.7 63.8 63.8 63.9 64.0 64.1 64.1 64.2 64.3 64.3 64.4 64.5 64.5 64.6 64.7 64.7 64.8 64.9 64.9 65.0 65.1 65.1 65.2 65.3 65.3 65.4 65.5 65.5 65.6 65.7 65.7 65.8 65.9 65.9 66.0 66.1 66.1 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.7 66.7 66.8 66.9 66.9 67.0 67.1 67.1 67.2 67.3 67.3 67.4 67.5 67.5 67.6 67.7 67.7 67.8 67.9 67.9 68.0 68.1 68.1 68.2 68.3 68.3 68.4 68.5 68.5 68.6 68.7 68.7 68.8 68.9 68.9 69.0 69.1 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.6 69.7 69.8 69.8 69.9 70.0 70.0 70.1 70.2 70.2 70.3 70.4 70.4 70.5 70.6 70.6 70.7 70.8 70.8 70.9 71.0 71.0 71.1 71.2 71.2 71.3 71.4 71.4 71.5 71.6 71.6 71.7 71.8 71.8 71.9 72.0 72.0 72.1 72.2 72.2 72.3 72.4 72.4 72.5 72.6 72.6 72.7 72.8 72.8 72.9 73.0 73.0 73.1 73.2 73.2 73.3 73.4 73.4 73.5 73.6 73.6 73.7 73.8 73.8 73.9 74.0 74.0 74.1 74.2 74.2 74.3 74.4 74.4 74.5 74.6 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.1 75.2 75.3 75.3 75.4 75.5 75.5 75.6 75.7 75.7 75.8 75.9 75.9 76.0 76.1 76.1 76.2 76.3 76.3 76.4 76.5 76.5 76.6 76.7 76.7 76.8 76.9 76.9 77.0 77.1 77.1 77.2 77.3 77.3 77.4 77.5 77.5 77.6 77.7 77.7 77.8 77.9 77.9 78.0 78.1 78.1 78.2 78.3 78.3 78.4 78.5 78.5 78.6 78.7 78.7 78.8 78.9 78.9 79.0 79.1 79.1 79.2 79.3 79.3 79.4 79.5 79.5 79.6 79.7 79.7 79.8 79.9 79.9 80.0 80.1 80.1 80.2 80.3 80.3 80.4 80.5 80.5 80.6 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.2 81.2 81.3 81.4 81.4 81.5 81.6 81.6 81.7 81.8 81.8 81.9 82.0 82.0 82.1 82.2 82.2 82.3 82.4 82.4 82.5 82.6 82.6 82.7 82.8 82.8 82.9 83.0 83.0 83.1 83.2 83.2 83.3 83.4 83.4 83.5 83.6 83.6 83.7 83.8 83.8 83.9 84.0 84.0 84.1 84.2 84.2 84.3 84.4 84.4 84.5 84.6 84.6 84.7 84.8 84.8 84.9 85.0 85.0 85.1 85.2 85.2 85.3 85.4 85.4 85.5 85.6 85.6 85.7 85.8 85.8 85.9 86.0 86.0 86.1 86.2 86.3 86.3 86.4 86.5 86.5 86.6 86.7 86.7 86.8 86.9 86.9 87.0 87.1 87.1 87.2 87.3 87.3 87.4 87.5 87.5 87.6 87.7 87.7 87.8 87.9 87.9 88.0 88.1 88.1 88.2 88.3 88.3 88.4 88.5 88.5 88.6 88.7 88.7 88.8 88.9 88.9 89.0 89.1 89.1 89.2 89.3 89.3 89.4 89.5 89.5 89.6 89.7 89.7 89.8 89.9 89.9 90.0 90.1 90.1 90.2 90.3 90.3 90.4 90.5 90.5 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.1 91.1 91.2 91.3 91.3 91.4 91.5 91.5 91.6 91.7 91.8 91.8 91.9 92.0 92.0 92.1 92.2 92.2 92.3 92.4 92.4 92.5 92.6 92.6 92.7 92.8 92.8 92.9 93.0 93.0 93.1 93.2 93.2 93.3 93.4 93.4 93.5 93.6 93.6 93.7 93.8 93.8 93.9 94.0 94.0 94.1 94.2 94.2 94.3 94.4 94.4 94.5 94.6 94.6 94.7 94.8 94.8 94.9 95.0 95.0 95.1 95.2 95.2 95.3 95.4 95.4 95.5 95.6 95.6 95.7 95.8 95.8 95.9 96.0 96.0 96.1 96.2 96.2 96.3 96.4 96.4 96.5 96.6 96.6 96.7 96.8 96.8 96.9 97.0 97.0 97.1 97.2 97.3 97.3 97.4 97.5 97.5 97.6 97.7 97.7 97.8 97.9 97.9 98.0 98.1 98.1 98.2 98.3 98.3 98.4 98.5 98.5 98.6 98.7 98.7 98.8 98.9 98.9 99.0 99.1 99.1 99.2 99.3 99.3 99.4 99.5 99.5 99.6 99.7 99.7 99.8 99.9 99.9 -found 34 predictions from path traversal Error with prediction: snap lend_intergenic: 11645, rend_intergenic: 8197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 17724, rend_intergenic: 17601 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22852, rend_intergenic: 18021 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 31926, rend_intergenic: 29701 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35025, rend_intergenic: 34287 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47464, rend_intergenic: 43814 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 368580, rend_intergenic: 365979 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 381409, rend_intergenic: 378741 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 395452, rend_intergenic: 386792 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 31 predictions persist after filtering for low support