-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_18248290-18471620

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_8530-T1
Valid prediction for GlimmerHMM_glimmerT_8529-T1
Valid prediction for GeneMark_model.13830_t
Valid prediction for GeneMark_model.13813_t
Valid prediction for snap_scaffold_3-snap.3619-T1
Valid prediction for snap_scaffold_3-snap.3597-T1
Valid prediction for snap_scaffold_3-snap.3601-T1
Valid prediction for snap_scaffold_3-snap.3594-T1
Valid prediction for snap_scaffold_3-snap.3628-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_8509-T1
Valid prediction for snap_scaffold_3-snap.3626-T1
Valid prediction for CodingQuarry_transcript_46359-T1
Valid prediction for snap_scaffold_3-snap.3610-T1
Valid prediction for GeneMark_model.13846_t
Valid prediction for GeneMark_model.13848_t
Valid prediction for snap_scaffold_3-snap.3622-T1
Valid prediction for GlimmerHMM_glimmerT_8513-T1
Valid prediction for snap_scaffold_3-snap.3603-T1
Valid prediction for GlimmerHMM_glimmerT_8516-T1
Valid prediction for GeneMark_model.13843_t
Valid prediction for snap_scaffold_3-snap.3625-T1
Valid prediction for Augustus_model.g5643.t1
Valid prediction for GeneMark_model.13814_t
Valid prediction for GlimmerHMM_glimmerT_8522-T1
Valid prediction for GeneMark_model.13839_t
Valid prediction for snap_scaffold_3-snap.3608-T1
Valid prediction for GeneMark_model.13826_t
Valid prediction for snap_scaffold_3-snap.3589-T1
Valid prediction for GeneMark_model.13818_t
Valid prediction for snap_scaffold_3-snap.3616-T1
Valid prediction for Augustus_model.g5663.t1
Valid prediction for GeneMark_model.13842_t
Valid prediction for Augustus_model.g5662.t1
Valid prediction for GlimmerHMM_glimmerT_8532-T1
Valid prediction for Augustus_model.g5657.t1
Valid prediction for GeneMark_model.13853_t
Valid prediction for snap_scaffold_3-snap.3599-T1
Valid prediction for GlimmerHMM_glimmerT_8510-T1
Valid prediction for snap_scaffold_3-snap.3596-T1
Valid prediction for GeneMark_model.13851_t
Valid prediction for GeneMark_model.13832_t
Valid prediction for GeneMark_model.13816_t
Couldn't classify 119732, 119799
Couldn't classify 120553, 120619
Sorry, prediction pasa_asmbl_40694.p1 fails validation.
(CAA)	 AT	119732-119799	GT	AGG
(AGT)	 AG	119893-120291	GT	AGG
(GTT)	 AG	120553-120619	AC	ACA
-recovered pasa_asmbl_40694.p1, internal, 119893, 120291
Valid prediction for GlimmerHMM_glimmerT_8520-T1
Valid prediction for snap_scaffold_3-snap.3613-T1
Valid prediction for snap_scaffold_3-snap.3604-T1
Valid prediction for GeneMark_model.13822_t
Valid prediction for GeneMark_model.13820_t
Couldn't classify 120811, 120887
Sorry, prediction pasa_asmbl_40695.p1 fails validation.
(AGG)	 CC	120811-120887	GT	AAG
(GTG)	 AG	121092-121578	GT	AGG
(ATT)	 AG	121667-121781	GT	CAG
(GTT)	 AG	121860-121988	GT	AAG
(TCC)	 AG	122146-122385	GT	CGG
(GCT)	 AG	122611-122755	GT	CGG
(TGT)	 AG	122847-122961	GT	AGG
(ATC)	 AG	123050-123142	GA	GAG
-recovered pasa_asmbl_40695.p1, terminal, 123050, 123142
-recovered pasa_asmbl_40695.p1, internal, 121092, 121578
-recovered pasa_asmbl_40695.p1, internal, 121667, 121781
-recovered pasa_asmbl_40695.p1, internal, 121860, 121988
-recovered pasa_asmbl_40695.p1, internal, 122146, 122385
-recovered pasa_asmbl_40695.p1, internal, 122611, 122755
-recovered pasa_asmbl_40695.p1, internal, 122847, 122961
Valid prediction for Augustus_model.g5655.t1
Valid prediction for GeneMark_model.13834_t
Valid prediction for GeneMark_model.13855_t
Valid prediction for snap_scaffold_3-snap.3592-T1
Valid prediction for GeneMark_model.13808_t
Valid prediction for snap_scaffold_3-snap.3620-T1
Valid prediction for GeneMark_model.13840_t
Valid prediction for GeneMark_model.13836_t
Valid prediction for GlimmerHMM_glimmerT_8512-T1
Valid prediction for HiQ_model.g5651.t1
Valid prediction for GeneMark_model.13811_t
Valid prediction for snap_scaffold_3-snap.3600-T1
Valid prediction for GlimmerHMM_glimmerT_8531-T1
Valid prediction for snap_scaffold_3-snap.3623-T1
Valid prediction for GeneMark_model.13844_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_46363-T1
Valid prediction for GlimmerHMM_glimmerT_8515-T1
Valid prediction for snap_scaffold_3-snap.3607-T1
Valid prediction for HiQ_model.g5658.t1
Valid prediction for GeneMark_model.13837_t
Valid prediction for snap_scaffold_3-snap.3611-T1
Valid prediction for snap_scaffold_3-snap.3618-T1
Valid prediction for snap_scaffold_3-snap.3630-T1
Valid prediction for Augustus_model.g5664.t1
Valid prediction for HiQ_model.g5659.t1
Valid prediction for GeneMark_model.13821_t
Couldn't classify 147951, 148101
Couldn't classify 153613, 153697
Sorry, prediction pasa_asmbl_39555.p1 fails validation.
(GAA)	 CA	147951-148101	GT	AGG
(TGT)	 AG	149033-149166	GT	ATG
(AGT)	 AG	150042-150152	GT	GGG
(AAT)	 AG	150253-150453	GT	CAG
(ACG)	 AG	150942-151078	GT	AGG
(GAC)	 AG	153613-153697	AG	TCA
-recovered pasa_asmbl_39555.p1, internal, 149033, 149166
-recovered pasa_asmbl_39555.p1, internal, 150042, 150152
-recovered pasa_asmbl_39555.p1, internal, 150253, 150453
-recovered pasa_asmbl_39555.p1, internal, 150942, 151078
Valid prediction for CodingQuarry_transcript_46361-T1
Valid prediction for Augustus_model.g5646.t1
Valid prediction for HiQ_model.g5652.t1
Valid prediction for HiQ_model.g5665.t1
Valid prediction for GeneMark_model.13852_t
Valid prediction for GlimmerHMM_glimmerT_8511-T1
Valid prediction for CodingQuarry_transcript_46362-T1
Valid prediction for Augustus_model.g5648.t1
Valid prediction for Augustus_model.g5660.t1
Valid prediction for Augustus_model.g5642.t1
Couldn't classify 163482, 163528
Sorry, prediction pasa_asmbl_39550.p1 fails validation.
(CTG)	 AC	163482-163528	GT	CGG
(TAG)	 AG	163939-164039	GT	AGG
(AAC)	 AG	166185-166309	GT	AGG
(AAT)	 AG	167407-167514	GT	TGG
(CTG)	 AG	167810-167935	GT	CGG
(GAG)	 AG	168270-168449	GT	TGG
(ACT)	 AG	169624-169833	GT	TGG
(CAC)	 AG	170114-170253	GT	CGG
(CCG)	 AG	170566-170683	AG	GAA
-recovered pasa_asmbl_39550.p1, terminal, 170566, 170683
-recovered pasa_asmbl_39550.p1, internal, 163939, 164039
-recovered pasa_asmbl_39550.p1, internal, 166185, 166309
-recovered pasa_asmbl_39550.p1, internal, 167407, 167514
-recovered pasa_asmbl_39550.p1, internal, 167810, 167935
-recovered pasa_asmbl_39550.p1, internal, 168270, 168449
-recovered pasa_asmbl_39550.p1, internal, 169624, 169833
-recovered pasa_asmbl_39550.p1, internal, 170114, 170253
Valid prediction for GlimmerHMM_glimmerT_8526-T1
Valid prediction for GeneMark_model.13849_t
Valid prediction for Augustus_model.g5656.t1
Couldn't classify 140689, 140769
Couldn't classify 144741, 144828
Sorry, prediction pasa_asmbl_39556.p1 fails validation.
(CCC)	 AG	140689-140769	GT	AGG
(ATG)	 AG	140849-140953	GT	AGG
(GAG)	 AG	141443-141613	GT	AGG
(AAT)	 AG	142143-142175	GT	AGG
(AAC)	 AG	143191-143636	GT	AGG
(ACG)	 AG	144741-144828	GG	TTG
-recovered pasa_asmbl_39556.p1, initial, 140849, 140953
-recovered pasa_asmbl_39556.p1, internal, 140689, 140769
-recovered pasa_asmbl_39556.p1, internal, 140849, 140953
-recovered pasa_asmbl_39556.p1, internal, 141443, 141613
-recovered pasa_asmbl_39556.p1, internal, 142143, 142175
-recovered pasa_asmbl_39556.p1, internal, 143191, 143636
Valid prediction for Augustus_model.g5661.t1
Valid prediction for GeneMark_model.13854_t
Valid prediction for GeneMark_model.13827_t
Valid prediction for Augustus_model.g5654.t1
Couldn't classify 94072, 94170
Sorry, prediction pasa_asmbl_39569.p1 fails validation.
(CTG)	 AA	94072-94170	GT	AGG
(ACT)	 AG	94761-94895	GT	AGG
(CCT)	 AG	95053-95136	GT	CGG
(GCT)	 AG	96244-96267	GT	AGG
(CAA)	 AG	96371-96472	AG	GAA
-recovered pasa_asmbl_39569.p1, terminal, 96371, 96472
-recovered pasa_asmbl_39569.p1, internal, 94761, 94895
-recovered pasa_asmbl_39569.p1, internal, 95053, 95136
-recovered pasa_asmbl_39569.p1, internal, 96244, 96267
Valid prediction for GeneMark_model.13835_t
Valid prediction for snap_scaffold_3-snap.3602-T1
Valid prediction for HiQ_model.g5650.t1
Valid prediction for snap_scaffold_3-snap.3615-T1
Valid prediction for snap_scaffold_3-snap.3621-T1
Valid prediction for pasa_asmbl_39560.p1
Valid prediction for GeneMark_model.13841_t
Valid prediction for GlimmerHMM_glimmerT_8524-T1
Valid prediction for snap_scaffold_3-snap.3595-T1
Valid prediction for snap_scaffold_3-snap.3591-T1
Valid prediction for GeneMark_model.13825_t
Valid prediction for pasa_asmbl_39572.p1
Valid prediction for GeneMark_model.13831_t
Valid prediction for pasa_asmbl_39566.p1
Valid prediction for snap_scaffold_3-snap.3631-T1
Valid prediction for GeneMark_model.13828_t
Valid prediction for GeneMark_model.13810_t
Valid prediction for GeneMark_model.13829_t
Valid prediction for snap_scaffold_3-snap.3629-T1
Valid prediction for GlimmerHMM_glimmerT_8519-T1
Valid prediction for snap_scaffold_3-snap.3593-T1
Valid prediction for snap_scaffold_3-snap.3614-T1
Valid prediction for GlimmerHMM_glimmerT_8521-T1
Valid prediction for Augustus_model.g5644.t1
Valid prediction for GeneMark_model.13824_t
Valid prediction for GlimmerHMM_glimmerT_8533-T1
Valid prediction for pasa_asmbl_39562.p1
Valid prediction for snap_scaffold_3-snap.3605-T1
Valid prediction for CodingQuarry_transcript_46360-T1
Valid prediction for GeneMark_model.13819_t
Valid prediction for snap_scaffold_3-snap.3586-T1
Valid prediction for snap_scaffold_3-snap.3612-T1
Valid prediction for GlimmerHMM_glimmerT_8523-T1
Valid prediction for snap_scaffold_3-snap.3587-T1
Valid prediction for GeneMark_model.13856_t
Valid prediction for snap_scaffold_3-snap.3606-T1
Valid prediction for GlimmerHMM_glimmerT_8517-T1
Valid prediction for Augustus_model.g5645.t1
Valid prediction for Augustus_model.g5647.t1
Valid prediction for GlimmerHMM_glimmerT_8527-T1
Couldn't classify 138260, 138312
Sorry, prediction pasa_asmbl_39559.p1 fails validation.
(ATG)	 GC	129308-129741	GT	GGG
(ATT)	 AG	130353-130492	GT	AGG
(ATA)	 AG	130694-130846	GT	GGG
(GTC)	 AG	131512-131685	GT	AGG
(GGG)	 AG	131799-131839	GT	AGG
(GAG)	 AG	131982-132048	GT	AGG
(ATC)	 AG	132247-132377	GT	AGG
(ATC)	 AG	132648-132876	GT	AGG
(ATG)	 AG	133077-133256	GT	AGG
(GTA)	 AG	134156-134289	GT	AAG
(GAG)	 AG	134425-134511	GT	AGG
(CCG)	 AG	134666-134735	GT	AAG
(TGA)	 AG	134879-134964	GT	AGG
(GCG)	 AG	135270-135398	GT	AGG
(GTT)	 AG	135625-135677	GT	AGG
(GTT)	 AG	136129-136262	GT	TGG
(GCA)	 AG	136755-136840	GT	TTG
(ATT)	 AG	137097-137238	GT	AGG
(CGG)	 AG	138260-138312	TA	TCT
-recovered pasa_asmbl_39559.p1, initial, 129308, 129741
add_exon() Sorry, pasa_asmbl_39559.p1 133077-133256-initial-1 is invalid.
-recovered pasa_asmbl_39559.p1, initial, 133077, 133256
add_exon() Sorry, pasa_asmbl_39559.p1 131512-131685-terminal-1 is invalid.
-recovered pasa_asmbl_39559.p1, terminal, 131512, 131685
-recovered pasa_asmbl_39559.p1, internal, 130353, 130492
-recovered pasa_asmbl_39559.p1, internal, 130694, 130846
-recovered pasa_asmbl_39559.p1, internal, 131512, 131685
-recovered pasa_asmbl_39559.p1, internal, 131799, 131839
-recovered pasa_asmbl_39559.p1, internal, 131982, 132048
-recovered pasa_asmbl_39559.p1, internal, 132247, 132377
-recovered pasa_asmbl_39559.p1, internal, 132648, 132876
-recovered pasa_asmbl_39559.p1, internal, 133077, 133256
-recovered pasa_asmbl_39559.p1, internal, 134156, 134289
-recovered pasa_asmbl_39559.p1, internal, 134425, 134511
-recovered pasa_asmbl_39559.p1, internal, 134666, 134735
-recovered pasa_asmbl_39559.p1, internal, 134879, 134964
-recovered pasa_asmbl_39559.p1, internal, 135270, 135398
-recovered pasa_asmbl_39559.p1, internal, 135625, 135677
-recovered pasa_asmbl_39559.p1, internal, 136129, 136262
-recovered pasa_asmbl_39559.p1, internal, 136755, 136840
-recovered pasa_asmbl_39559.p1, internal, 137097, 137238
Valid prediction for GeneMark_model.13838_t
Valid prediction for GlimmerHMM_glimmerT_8525-T1
Valid prediction for GeneMark_model.13823_t
Valid prediction for GlimmerHMM_glimmerT_8528-T1
Valid prediction for snap_scaffold_3-snap.3590-T1
Valid prediction for GeneMark_model.13845_t
Valid prediction for HiQ_model.g5649.t1
Valid prediction for GeneMark_model.13815_t
Valid prediction for GeneMark_model.13812_t
Valid prediction for snap_scaffold_3-snap.3617-T1
Valid prediction for snap_scaffold_3-snap.3598-T1
Valid prediction for snap_scaffold_3-snap.3588-T1
Valid prediction for GlimmerHMM_glimmerT_8514-T1
Valid prediction for snap_scaffold_3-snap.3609-T1
Valid prediction for GeneMark_model.13833_t
Valid prediction for GlimmerHMM_glimmerT_8518-T1
Valid prediction for GeneMark_model.13817_t
Valid prediction for HiQ_model.g5653.t1
Valid prediction for snap_scaffold_3-snap.3624-T1
Valid prediction for snap_scaffold_3-snap.3627-T1
Valid prediction for GeneMark_model.13809_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 71149, rend_intergenic: 71146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30373, rend_intergenic: 21023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45992, rend_intergenic: 37612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59456, rend_intergenic: 56756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68252, rend_intergenic: 60855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70782, rend_intergenic: 69313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75855, rend_intergenic: 70855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92912, rend_intergenic: 82281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134270, rend_intergenic: 131764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147224, rend_intergenic: 142669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166887, rend_intergenic: 159672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170656, rend_intergenic: 167925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199854, rend_intergenic: 196507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205881, rend_intergenic: 200876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209087, rend_intergenic: 208221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214163, rend_intergenic: 210846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 223331
-exon list size: 950


building trellis

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31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 31 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 71149, rend_intergenic: 71146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30373, rend_intergenic: 21023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45992, rend_intergenic: 37612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59456, rend_intergenic: 56756  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68252, rend_intergenic: 60855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 70782, rend_intergenic: 69313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75855, rend_intergenic: 70855  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92912, rend_intergenic: 82281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134270, rend_intergenic: 131764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147224, rend_intergenic: 142669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166887, rend_intergenic: 159672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170656, rend_intergenic: 167925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199854, rend_intergenic: 196507  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205881, rend_intergenic: 200876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209087, rend_intergenic: 208221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214163, rend_intergenic: 210846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support