-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_17269897-17459478

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for pasa_asmbl_40627.p1
Couldn't classify 109226, 109288
Couldn't classify 118774, 118884
Sorry, prediction pasa_asmbl_40635.p1 fails validation.
(GAC)	 GC	109226-109288	GT	AGG
(GGG)	 AG	110692-110774	GT	CAG
(TGG)	 AG	110921-110984	GT	TCG
(GAT)	 AG	111383-111455	GT	GGG
(ATG)	 AG	111815-111882	GT	CTG
(ATG)	 AG	112141-112206	GT	TGG
(CAT)	 AG	112641-112709	GT	CTG
(GTC)	 AG	113506-113672	GT	ACG
(CAA)	 AG	115059-115143	GT	AGG
(TAT)	 AG	115223-115310	GT	AAG
(AGG)	 AG	115646-115697	GT	GGG
(CGT)	 AG	116122-116221	GT	AGG
(CTG)	 AG	116314-116385	GT	CGG
(GAG)	 AG	116749-116835	GT	TGG
(CTC)	 AG	117020-117100	GT	AGG
(TGC)	 AG	117200-117250	GT	AGG
(GGA)	 AG	117355-117418	GT	GAG
(AGG)	 AG	117758-117863	GT	CAG
(TGA)	 AG	117997-118116	GT	AGG
(TGG)	 AG	118407-118575	GT	GGG
(GTG)	 AG	118774-118884	AA	GTA
add_exon() Sorry, pasa_asmbl_40635.p1 111815-111882-initial-1 is invalid.
-recovered pasa_asmbl_40635.p1, initial, 111815, 111882
-recovered pasa_asmbl_40635.p1, initial, 112141, 112206
-recovered pasa_asmbl_40635.p1, internal, 110692, 110774
-recovered pasa_asmbl_40635.p1, internal, 110921, 110984
-recovered pasa_asmbl_40635.p1, internal, 111383, 111455
-recovered pasa_asmbl_40635.p1, internal, 111815, 111882
-recovered pasa_asmbl_40635.p1, internal, 112141, 112206
-recovered pasa_asmbl_40635.p1, internal, 112641, 112709
-recovered pasa_asmbl_40635.p1, internal, 113506, 113672
-recovered pasa_asmbl_40635.p1, internal, 115059, 115143
-recovered pasa_asmbl_40635.p1, internal, 115223, 115310
-recovered pasa_asmbl_40635.p1, internal, 115646, 115697
-recovered pasa_asmbl_40635.p1, internal, 116122, 116221
-recovered pasa_asmbl_40635.p1, internal, 116314, 116385
-recovered pasa_asmbl_40635.p1, internal, 116749, 116835
-recovered pasa_asmbl_40635.p1, internal, 117020, 117100
-recovered pasa_asmbl_40635.p1, internal, 117200, 117250
-recovered pasa_asmbl_40635.p1, internal, 117355, 117418
-recovered pasa_asmbl_40635.p1, internal, 117758, 117863
-recovered pasa_asmbl_40635.p1, internal, 117997, 118116
-recovered pasa_asmbl_40635.p1, internal, 118407, 118575
Valid prediction for GeneMark_model.13585_t
Valid prediction for GeneMark_model.13609_t
Valid prediction for GlimmerHMM_glimmerT_8361-T1
Valid prediction for GlimmerHMM_glimmerT_8359-T1
Valid prediction for snap_scaffold_3-snap.3395-T1
Valid prediction for GeneMark_model.13620_t
Valid prediction for GlimmerHMM_glimmerT_8352-T1
Valid prediction for snap_scaffold_3-snap.3383-T1
Valid prediction for GeneMark_model.13622_t
Valid prediction for GlimmerHMM_glimmerT_8368-T1
Valid prediction for snap_scaffold_3-snap.3362-T1
Valid prediction for snap_scaffold_3-snap.3391-T1
Valid prediction for snap_scaffold_3-snap.3381-T1
Couldn't classify 33384, 33460
Sorry, prediction pasa_asmbl_40751.p1 fails validation.
(CAG)	 CC	33384-33460	GT	AGG
(ACC)	 AG	34063-34185	GT	AAG
(ACC)	 AG	34495-34574	GT	AAG
(ATT)	 AG	34722-34909	GT	AGG
(GCT)	 AG	35089-35154	GT	AGG
(TGC)	 AG	35263-35355	GT	AGG
(TTC)	 AG	36110-36233	GT	GGG
(TGG)	 AG	36915-37033	GT	AGG
(CAA)	 AG	37688-37777	GC	AGG
(GAC)	 AG	37957-38046	GT	AGG
(AGT)	 AG	39189-39304	GC	AGG
(AGT)	 AG	39645-39714	GT	AAG
(TTT)	 AG	40036-40161	GT	AGG
(TAC)	 AG	40248-40319	GT	GGG
(CTG)	 AG	40666-40812	GT	AGG
(CGC)	 AG	41224-41307	GT	AGG
(ACT)	 AG	41458-41569	GT	AGG
(ACC)	 AG	43517-43695	GT	AGG
(AGC)	 AG	44222-44338	GT	ACG
(AAC)	 AG	44443-44554	GT	GGG
(CCA)	 AG	44674-44909	CT	AGC
-recovered pasa_asmbl_40751.p1, terminal, 44674, 44909
-recovered pasa_asmbl_40751.p1, internal, 34063, 34185
-recovered pasa_asmbl_40751.p1, internal, 34495, 34574
-recovered pasa_asmbl_40751.p1, internal, 34722, 34909
-recovered pasa_asmbl_40751.p1, internal, 35089, 35154
-recovered pasa_asmbl_40751.p1, internal, 35263, 35355
-recovered pasa_asmbl_40751.p1, internal, 36110, 36233
-recovered pasa_asmbl_40751.p1, internal, 36915, 37033
-recovered pasa_asmbl_40751.p1, internal, 37688, 37777
-recovered pasa_asmbl_40751.p1, internal, 37957, 38046
-recovered pasa_asmbl_40751.p1, internal, 39189, 39304
-recovered pasa_asmbl_40751.p1, internal, 39645, 39714
-recovered pasa_asmbl_40751.p1, internal, 40036, 40161
-recovered pasa_asmbl_40751.p1, internal, 40248, 40319
-recovered pasa_asmbl_40751.p1, internal, 40666, 40812
-recovered pasa_asmbl_40751.p1, internal, 41224, 41307
-recovered pasa_asmbl_40751.p1, internal, 41458, 41569
-recovered pasa_asmbl_40751.p1, internal, 43517, 43695
-recovered pasa_asmbl_40751.p1, internal, 44222, 44338
-recovered pasa_asmbl_40751.p1, internal, 44443, 44554
Valid prediction for GeneMark_model.13613_t
Valid prediction for snap_scaffold_3-snap.3363-T1
Valid prediction for GlimmerHMM_glimmerT_8365-T1
Valid prediction for snap_scaffold_3-snap.3386-T1
Valid prediction for HiQ_model.g5558.t1
Valid prediction for GeneMark_model.13610_t
Valid prediction for GeneMark_model.13593_t
Couldn't classify 50621, 50806
Sorry, prediction pasa_asmbl_40626.p1 fails validation.
(CAT)	 CA	50621-50806	GT	AGG
(ACC)	 AG	51073-51210	GT	AGG
(TTC)	 AG	51291-51473	GT	AGG
(GTG)	 AG	51620-51733	GT	AGG
(AAC)	 AG	51855-52070	GT	AGG
(GCT)	 AG	52403-52460	GT	AGG
(GCA)	 AG	52738-52844	GT	AGG
(GAT)	 AG	53497-53619	GT	AGG
(AAA)	 AG	53749-53862	GT	AGG
(GGA)	 AG	55185-55331	GT	GGG
(ATC)	 AG	55785-55995	GT	CAG
(CTA)	 AG	57061-57251	GT	AGG
(GTG)	 AG	57844-57944	GT	AGG
(GCA)	 AG	58184-58322	GT	CGG
(ATC)	 AG	58803-58928	CC	GAC
-recovered pasa_asmbl_40626.p1, terminal, 58803, 58928
-recovered pasa_asmbl_40626.p1, internal, 51073, 51210
-recovered pasa_asmbl_40626.p1, internal, 51291, 51473
-recovered pasa_asmbl_40626.p1, internal, 51620, 51733
-recovered pasa_asmbl_40626.p1, internal, 51855, 52070
-recovered pasa_asmbl_40626.p1, internal, 52403, 52460
-recovered pasa_asmbl_40626.p1, internal, 52738, 52844
-recovered pasa_asmbl_40626.p1, internal, 53497, 53619
-recovered pasa_asmbl_40626.p1, internal, 53749, 53862
-recovered pasa_asmbl_40626.p1, internal, 55185, 55331
-recovered pasa_asmbl_40626.p1, internal, 55785, 55995
-recovered pasa_asmbl_40626.p1, internal, 57061, 57251
-recovered pasa_asmbl_40626.p1, internal, 57844, 57944
-recovered pasa_asmbl_40626.p1, internal, 58184, 58322
Valid prediction for GeneMark_model.13626_t
Valid prediction for Augustus_model.g5552.t1
Valid prediction for snap_scaffold_3-snap.3392-T1
Valid prediction for snap_scaffold_3-snap.3375-T1
Valid prediction for GeneMark_model.13629_t
Valid prediction for GeneMark_model.13624_t
Valid prediction for GeneMark_model.13598_t
Valid prediction for GlimmerHMM_glimmerT_8356-T1
Valid prediction for Augustus_model.g5541.t1
Valid prediction for GeneMark_model.13601_t
Valid prediction for GlimmerHMM_glimmerT_8363-T1
Valid prediction for GlimmerHMM_glimmerT_8350-T1
Valid prediction for GlimmerHMM_glimmerT_8353-T1
Valid prediction for GeneMark_model.13581_t
Valid prediction for GeneMark_model.13612_t
Valid prediction for GlimmerHMM_glimmerT_8357-T1
Valid prediction for snap_scaffold_3-snap.3388-T1
Valid prediction for snap_scaffold_3-snap.3390-T1
Valid prediction for CodingQuarry_transcript_46328-T1
Valid prediction for GlimmerHMM_glimmerT_8351-T1
Valid prediction for Augustus_model.g5543.t1
Valid prediction for GeneMark_model.13600_t
Valid prediction for GlimmerHMM_glimmerT_8355-T1
Valid prediction for GeneMark_model.13580_t
Valid prediction for CodingQuarry_transcript_46338-T1
Valid prediction for snap_scaffold_3-snap.3365-T1
Valid prediction for GeneMark_model.13628_t
Valid prediction for GlimmerHMM_glimmerT_8373-T1
Valid prediction for HiQ_model.g5546.t1
Valid prediction for GeneMark_model.13577_t
Valid prediction for snap_scaffold_3-snap.3399-T1
Valid prediction for GeneMark_model.13590_t
Valid prediction for snap_scaffold_3-snap.3377-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g5550.t1
Valid prediction for snap_scaffold_3-snap.3394-T1
Couldn't classify 105198, 105272
Sorry, prediction pasa_asmbl_40634.p1 fails validation.
(ATG)	 TC	103394-103469	GT	CGG
(TTT)	 AG	104403-104629	GT	AGG
(TCG)	 AG	105198-105272	AA	ACA
-recovered pasa_asmbl_40634.p1, initial, 103394, 103469
-recovered pasa_asmbl_40634.p1, internal, 104403, 104629
Valid prediction for snap_scaffold_3-snap.3371-T1
Valid prediction for pasa_asmbl_40641.p2
Valid prediction for GeneMark_model.13597_t
Valid prediction for GeneMark_model.13595_t
Couldn't classify 18513, 18605
Couldn't classify 24829, 24963
Sorry, prediction pasa_asmbl_40625.p1 fails validation.
(CAG)	 CG	18513-18605	GT	AGG
(TGC)	 AG	20663-20745	GT	AAG
(CAA)	 AG	21505-21574	GT	AGG
(GAC)	 AG	24346-24441	GT	GGG
(TCT)	 AG	24829-24963	GT	AGG
-recovered pasa_asmbl_40625.p1, internal, 20663, 20745
-recovered pasa_asmbl_40625.p1, internal, 21505, 21574
-recovered pasa_asmbl_40625.p1, internal, 24346, 24441
-recovered pasa_asmbl_40625.p1, internal, 24829, 24963
Valid prediction for snap_scaffold_3-snap.3367-T1
Valid prediction for Augustus_model.g5542.t1
Valid prediction for Augustus_model.g5549.t1
Valid prediction for pasa_asmbl_40638.p1
Valid prediction for snap_scaffold_3-snap.3398-T1
Valid prediction for snap_scaffold_3-snap.3360-T1
Valid prediction for GlimmerHMM_glimmerT_8362-T1
Valid prediction for CodingQuarry_transcript_46337-T1
Valid prediction for GeneMark_model.13607_t
Valid prediction for HiQ_model.g5559.t1
Valid prediction for GeneMark_model.13599_t
Valid prediction for GeneMark_model.13583_t
Valid prediction for GeneMark_model.13619_t
Valid prediction for HiQ_model.g5555.t1
Valid prediction for snap_scaffold_3-snap.3387-T1
Valid prediction for GlimmerHMM_glimmerT_8371-T1
Valid prediction for GeneMark_model.13602_t
Valid prediction for GeneMark_model.13615_t
Valid prediction for Augustus_model.g5545.t1
Valid prediction for GeneMark_model.13588_t
Valid prediction for GlimmerHMM_glimmerT_8354-T1
Valid prediction for Augustus_model.g5544.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.13591_t
Valid prediction for GeneMark_model.13594_t
Valid prediction for GlimmerHMM_glimmerT_8370-T1
Valid prediction for Augustus_model.g5553.t1
Valid prediction for Augustus_model.g5556.t1
Valid prediction for GlimmerHMM_glimmerT_8358-T1
Valid prediction for Augustus_model.g5540.t1
Valid prediction for GlimmerHMM_glimmerT_8366-T1
Valid prediction for snap_scaffold_3-snap.3385-T1
Valid prediction for snap_scaffold_3-snap.3384-T1
Valid prediction for snap_scaffold_3-snap.3382-T1
Valid prediction for snap_scaffold_3-snap.3359-T1
Valid prediction for snap_scaffold_3-snap.3372-T1
Valid prediction for snap_scaffold_3-snap.3389-T1
Valid prediction for GeneMark_model.13578_t
Valid prediction for GeneMark_model.13576_t
Valid prediction for snap_scaffold_3-snap.3396-T1
Valid prediction for GeneMark_model.13603_t
Valid prediction for snap_scaffold_3-snap.3358-T1
Valid prediction for snap_scaffold_3-snap.3370-T1
Valid prediction for GeneMark_model.13621_t
Valid prediction for GeneMark_model.13586_t
Valid prediction for snap_scaffold_3-snap.3368-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for CodingQuarry_transcript_46331-T1
Valid prediction for snap_scaffold_3-snap.3379-T1
Couldn't classify 30694, 30837
Couldn't classify 33835, 33924
Sorry, prediction pasa_asmbl_39509.p1 fails validation.
(TTT)	 GG	30694-30837	GT	AGG
(GCT)	 AG	31529-31616	GT	AAG
(TGG)	 AG	33002-33255	GT	TGG
(GTC)	 AG	33835-33924	TA	CCT
-recovered pasa_asmbl_39509.p1, internal, 31529, 31616
-recovered pasa_asmbl_39509.p1, internal, 33002, 33255
Valid prediction for snap_scaffold_3-snap.3380-T1
Valid prediction for GlimmerHMM_glimmerT_8372-T1
Valid prediction for GeneMark_model.13582_t
Valid prediction for GeneMark_model.13617_t
Valid prediction for snap_scaffold_3-snap.3361-T1
Valid prediction for GeneMark_model.13589_t
Valid prediction for GlimmerHMM_glimmerT_8360-T1
Valid prediction for snap_scaffold_3-snap.3376-T1
Couldn't classify 34200, 34266
Sorry, prediction pasa_asmbl_39508.p1 fails validation.
(CAG)	 TT	34200-34266	GT	AGG
(ACG)	 AG	34500-34578	GT	AGG
(TTT)	 AG	35320-35464	GT	AGG
(GGA)	 AG	35576-35720	GT	AGG
(GGT)	 AG	36112-36238	GT	AGG
(GCA)	 AG	36623-36745	GT	AAG
(GAA)	 AG	37161-37269	CA	AGC
-recovered pasa_asmbl_39508.p1, terminal, 37161, 37269
-recovered pasa_asmbl_39508.p1, internal, 34500, 34578
-recovered pasa_asmbl_39508.p1, internal, 35320, 35464
-recovered pasa_asmbl_39508.p1, internal, 35576, 35720
-recovered pasa_asmbl_39508.p1, internal, 36112, 36238
-recovered pasa_asmbl_39508.p1, internal, 36623, 36745
Valid prediction for GeneMark_model.13625_t
Valid prediction for GeneMark_model.13606_t
Valid prediction for snap_scaffold_3-snap.3364-T1
Valid prediction for GeneMark_model.13596_t
Valid prediction for Augustus_model.g5551.t1
Valid prediction for GeneMark_model.13584_t
Valid prediction for snap_scaffold_3-snap.3378-T1
Valid prediction for GeneMark_model.13579_t
Valid prediction for GlimmerHMM_glimmerT_8364-T1
Valid prediction for Augustus_model.g5557.t1
Valid prediction for snap_scaffold_3-snap.3366-T1
Valid prediction for GlimmerHMM_glimmerT_8367-T1
Valid prediction for GeneMark_model.13611_t
Valid prediction for GeneMark_model.13627_t
Valid prediction for GeneMark_model.13604_t
Valid prediction for GeneMark_model.13618_t
Valid prediction for snap_scaffold_3-snap.3374-T1
Couldn't classify 100865, 101240
Sorry, prediction pasa_asmbl_39491.p1 fails validation.
(ATG)	 TG	100543-100760	GT	AGG
(ATA)	 AG	100865-101240	CA	AGC
-recovered pasa_asmbl_39491.p1, initial, 100543, 100760
Valid prediction for CodingQuarry_transcript_46332-T1
Valid prediction for GeneMark_model.13614_t
Valid prediction for CodingQuarry_transcript_46330-T1
Valid prediction for snap_scaffold_3-snap.3369-T1
Valid prediction for snap_scaffold_3-snap.3393-T1
Valid prediction for GlimmerHMM_glimmerT_8369-T1
Valid prediction for GeneMark_model.13587_t
Valid prediction for snap_scaffold_3-snap.3397-T1
Valid prediction for GeneMark_model.13616_t
Valid prediction for GeneMark_model.13605_t
Valid prediction for GeneMark_model.13592_t
Valid prediction for Augustus_model.g5547.t1
Valid prediction for GeneMark_model.13608_t
Valid prediction for GeneMark_model.13623_t
Couldn't classify 95464, 95679
Sorry, prediction pasa_asmbl_39499.p1 fails validation.
(GTG)	 AA	95464-95679	GT	AGG
(GTG)	 AG	95895-96055	GT	AGG
(GGT)	 AG	96172-96326	GT	GGG
(GAC)	 AG	96438-96613	GT	AGG
(CTT)	 AG	97085-97288	AA	AAA
-recovered pasa_asmbl_39499.p1, terminal, 97085, 97288
-recovered pasa_asmbl_39499.p1, internal, 95895, 96055
-recovered pasa_asmbl_39499.p1, internal, 96172, 96326
-recovered pasa_asmbl_39499.p1, internal, 96438, 96613
Valid prediction for snap_scaffold_3-snap.3373-T1
Valid prediction for Augustus_model.g5554.t1
Valid prediction for HiQ_model.g5548.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12368, rend_intergenic: 6644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16179, rend_intergenic: 13016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23980, rend_intergenic: 21488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24437, rend_intergenic: 24108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30900, rend_intergenic: 29200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34158, rend_intergenic: 31240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58928, rend_intergenic: 35077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74940, rend_intergenic: 69665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78034, rend_intergenic: 75397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88579, rend_intergenic: 83461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110978, rend_intergenic: 106813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120493, rend_intergenic: 112749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145142, rend_intergenic: 136239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167468, rend_intergenic: 161080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170481, rend_intergenic: 167806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177533, rend_intergenic: 172759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 189582
-exon list size: 839


building trellis

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16.2    
16.3    
16.4    
16.5    
16.6    
16.8    
16.9    
17.0    
17.1    
17.2    
17.4    
17.5    
17.6    
17.7    
17.8    
18.0    
18.1    
18.2    
18.3    
18.4    
18.5    
18.7    
18.8    
18.9    
19.0    
19.1    
19.3    
19.4    
19.5    
19.6    
19.7    
19.9    
20.0    
20.1    
20.2    
20.3    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.2    
21.3    
21.4    
21.5    
21.6    
21.8    
21.9    
22.0    
22.1    
22.2    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.1    
23.2    
23.3    
23.4    
23.5    
23.7    
23.8    
23.9    
24.0    
24.1    
24.3    
24.4    
24.5    
24.6    
24.7    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.6    
25.7    
25.8    
25.9    
26.0    
26.2    
26.3    
26.4    
26.5    
26.6    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.5    
27.6    
27.7    
27.8    
27.9    
28.1    
28.2    
28.3    
28.4    
28.5    
28.7    
28.8    
28.9    
29.0    
29.1    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
30.0    
30.1    
30.2    
30.3    
30.4    
30.6    
30.7    
30.8    
30.9    
31.0    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.9    
32.0    
32.1    
32.2    
32.3    
32.5    
32.6    
32.7    
32.8    
32.9    
33.1    
33.2    
33.3    
33.4    
33.5    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.4    
34.5    
34.6    
34.7    
34.8    
35.0    
35.1    
35.2    
35.3    
35.4    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.3    
36.4    
36.5    
36.6    
36.7    
36.9    
37.0    
37.1    
37.2    
37.3    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.2    
38.3    
38.4    
38.5    
38.6    
38.8    
38.9    
39.0    
39.1    
39.2    
39.4    
39.5    
39.6    
39.7    
39.8    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.7    
40.8    
40.9    
41.0    
41.1    
41.3    
41.4    
41.5    
41.6    
41.7    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.6    
42.7    
42.8    
42.9    
43.0    
43.2    
43.3    
43.4    
43.5    
43.6    
43.8    
43.9    
44.0    
44.1    
44.2    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.1    
45.2    
45.3    
45.4    
45.5    
45.7    
45.8    
45.9    
46.0    
46.1    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.3    
47.4    
47.6    
47.7    
47.8    
47.9    
48.0    
48.2    
48.3    
48.4    
48.5    
48.6    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.7    
51.8    
52.0    
52.1    
52.2    
52.3    
52.4    
52.6    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.2    
54.3    
54.5    
54.6    
54.7    
54.8    
54.9    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.8    
55.9    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.3    
57.4    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.2    
59.3    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.2    
60.3    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.8    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.0    
63.1    
63.3    
63.4    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.6    
64.7    
64.8    
64.9    
65.0    
65.2    
65.3    
65.4    
65.5    
65.6    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.5    
66.6    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
69.0    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
69.9    
70.0    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.9    
71.0    
71.1    
71.2    
71.3    
71.5    
71.6    
71.7    
71.8    
71.9    
72.1    
72.2    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.4    
73.5    
73.6    
73.7    
73.8    
74.0    
74.1    
74.2    
74.3    
74.4    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.3    
75.4    
75.5    
75.6    
75.7    
75.9    
76.0    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.8    
76.9    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.0    
80.1    
80.3    
80.4    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.2    
82.3    
82.4    
82.5    
82.6    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.1    
84.2    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.6    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.6    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.5    
88.6    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.9    
93.0    
93.1    
93.2    
93.3    
93.5    
93.6    
93.7    
93.8    
93.9    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.8    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.8    
96.0    
96.1    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.6    
97.7    
97.9    
98.0    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.2    
99.3    
99.4    
99.5    
99.6    
99.8    
99.9    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 12368, rend_intergenic: 6644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16179, rend_intergenic: 13016  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23980, rend_intergenic: 21488  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24437, rend_intergenic: 24108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30900, rend_intergenic: 29200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34158, rend_intergenic: 31240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58928, rend_intergenic: 35077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74940, rend_intergenic: 69665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78034, rend_intergenic: 75397  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88579, rend_intergenic: 83461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110978, rend_intergenic: 106813  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120493, rend_intergenic: 112749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145142, rend_intergenic: 136239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167468, rend_intergenic: 161080  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170481, rend_intergenic: 167806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177533, rend_intergenic: 172759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support