-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_16582304-16712684

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g5477.t1
Valid prediction for snap_scaffold_3-snap.3210-T1
Valid prediction for snap_scaffold_3-snap.3204-T1
Valid prediction for snap_scaffold_3-snap.3206-T1
Valid prediction for Augustus_model.g5473.t1
Valid prediction for GeneMark_model.13377_t
Valid prediction for GlimmerHMM_glimmerT_8228-T1
Valid prediction for GlimmerHMM_glimmerT_8236-T1
Valid prediction for snap_scaffold_3-snap.3208-T1
Valid prediction for snap_scaffold_3-snap.3202-T1
Valid prediction for GeneMark_model.13368_t
Valid prediction for GeneMark_model.13374_t
Valid prediction for GlimmerHMM_glimmerT_8227-T1
Valid prediction for snap_scaffold_3-snap.3203-T1
Valid prediction for GlimmerHMM_glimmerT_8226-T1
Valid prediction for GeneMark_model.13381_t
Valid prediction for GeneMark_model.13371_t
Valid prediction for snap_scaffold_3-snap.3205-T1
Valid prediction for GeneMark_model.13384_t
Valid prediction for GlimmerHMM_glimmerT_8230-T1
Valid prediction for GeneMark_model.13376_t
Valid prediction for GeneMark_model.13370_t
Valid prediction for GeneMark_model.13373_t
Valid prediction for snap_scaffold_3-snap.3213-T1
Valid prediction for GeneMark_model.13382_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_8229-T1
Valid prediction for GeneMark_model.13369_t
Valid prediction for GlimmerHMM_glimmerT_8225-T1
Valid prediction for Augustus_model.g5475.t1
Valid prediction for GlimmerHMM_glimmerT_8232-T1
Valid prediction for snap_scaffold_3-snap.3200-T1
Valid prediction for snap_scaffold_3-snap.3201-T1
Valid prediction for GlimmerHMM_glimmerT_8233-T1
Valid prediction for GlimmerHMM_glimmerT_8237-T1
Valid prediction for GlimmerHMM_glimmerT_8235-T1
Valid prediction for GlimmerHMM_glimmerT_8224-T1
Valid prediction for Augustus_model.g5472.t1
Valid prediction for Augustus_model.g5470.t1
Valid prediction for Augustus_model.g5476.t1
Valid prediction for Augustus_model.g5474.t1
Valid prediction for GeneMark_model.13379_t
Valid prediction for Augustus_model.g5478.t1
Valid prediction for snap_scaffold_3-snap.3207-T1
Valid prediction for GlimmerHMM_glimmerT_8238-T1
Valid prediction for GeneMark_model.13383_t
Valid prediction for snap_scaffold_3-snap.3211-T1
Valid prediction for GlimmerHMM_glimmerT_8231-T1
Valid prediction for GeneMark_model.13378_t
Valid prediction for Augustus_model.g5471.t1
Valid prediction for GeneMark_model.13380_t
Valid prediction for GeneMark_model.13375_t
Valid prediction for GlimmerHMM_glimmerT_8223-T1
Valid prediction for GlimmerHMM_glimmerT_8234-T1
Valid prediction for snap_scaffold_3-snap.3209-T1
Valid prediction for snap_scaffold_3-snap.3212-T1
Valid prediction for GeneMark_model.13372_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18570, rend_intergenic: 17096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97944, rend_intergenic: 93798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107707, rend_intergenic: 103715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128308, rend_intergenic: 113748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 130381
-exon list size: 236


building trellis

0.4    
0.8    
1.3    
1.7    
2.1    
2.5    
2.9    
3.4    
3.8    
4.2    
4.6    
5.0    
5.5    
5.9    
6.3    
6.7    
7.1    
7.6    
8.0    
8.4    
8.8    
9.2    
9.7    
10.1    
10.5    
10.9    
11.3    
11.8    
12.2    
12.6    
13.0    
13.4    
13.9    
14.3    
14.7    
15.1    
15.5    
16.0    
16.4    
16.8    
17.2    
17.6    
18.1    
18.5    
18.9    
19.3    
19.7    
20.2    
20.6    
21.0    
21.4    
21.8    
22.3    
22.7    
23.1    
23.5    
23.9    
24.4    
24.8    
25.2    
25.6    
26.1    
26.5    
26.9    
27.3    
27.7    
28.2    
28.6    
29.0    
29.4    
29.8    
30.3    
30.7    
31.1    
31.5    
31.9    
32.4    
32.8    
33.2    
33.6    
34.0    
34.5    
34.9    
35.3    
35.7    
36.1    
36.6    
37.0    
37.4    
37.8    
38.2    
38.7    
39.1    
39.5    
39.9    
40.3    
40.8    
41.2    
41.6    
42.0    
42.4    
42.9    
43.3    
43.7    
44.1    
44.5    
45.0    
45.4    
45.8    
46.2    
46.6    
47.1    
47.5    
47.9    
48.3    
48.7    
49.2    
49.6    
50.0    
50.4    
50.8    
51.3    
51.7    
52.1    
52.5    
52.9    
53.4    
53.8    
54.2    
54.6    
55.0    
55.5    
55.9    
56.3    
56.7    
57.1    
57.6    
58.0    
58.4    
58.8    
59.2    
59.7    
60.1    
60.5    
60.9    
61.3    
61.8    
62.2    
62.6    
63.0    
63.4    
63.9    
64.3    
64.7    
65.1    
65.5    
66.0    
66.4    
66.8    
67.2    
67.6    
68.1    
68.5    
68.9    
69.3    
69.7    
70.2    
70.6    
71.0    
71.4    
71.8    
72.3    
72.7    
73.1    
73.5    
73.9    
74.4    
74.8    
75.2    
75.6    
76.1    
76.5    
76.9    
77.3    
77.7    
78.2    
78.6    
79.0    
79.4    
79.8    
80.3    
80.7    
81.1    
81.5    
81.9    
82.4    
82.8    
83.2    
83.6    
84.0    
84.5    
84.9    
85.3    
85.7    
86.1    
86.6    
87.0    
87.4    
87.8    
88.2    
88.7    
89.1    
89.5    
89.9    
90.3    
90.8    
91.2    
91.6    
92.0    
92.4    
92.9    
93.3    
93.7    
94.1    
94.5    
95.0    
95.4    
95.8    
96.2    
96.6    
97.1    
97.5    
97.9    
98.3    
98.7    
99.2    
99.6    
-found 15 predictions from path traversal
Error with prediction: snap lend_intergenic: 18570, rend_intergenic: 17096  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 97944, rend_intergenic: 93798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107707, rend_intergenic: 103715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128308, rend_intergenic: 113748  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support