-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_16067513-16303090 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.13250_t Valid prediction for GlimmerHMM_glimmerT_8170-T1 Valid prediction for GeneMark_model.13287_t Valid prediction for GlimmerHMM_glimmerT_8159-T1 Valid prediction for GeneMark_model.13258_t Valid prediction for GeneMark_model.13275_t Valid prediction for pasa_asmbl_40567.p1 Couldn't classify 120847, 120970 Sorry, prediction pasa_asmbl_40574.p1 fails validation. (AAT) CC 120847-120970 GT AGG (GCC) AG 121673-121808 GT CGG (GAA) AG 122082-122247 GT AGG (TCC) AG 122658-122915 GT CGG (AGC) AG 123156-123243 GT TGG (GTG) AG 123333-123472 GT CTG (AGG) AG 125103-125186 GT AGG (ACT) AG 125548-125688 GT TGG (GTG) AG 125801-125885 GT AGG (AGA) AG 126115-126235 GT TCG (AGA) AG 126413-126599 AA AGA -recovered pasa_asmbl_40574.p1, terminal, 126413, 126599 -recovered pasa_asmbl_40574.p1, internal, 121673, 121808 -recovered pasa_asmbl_40574.p1, internal, 122082, 122247 -recovered pasa_asmbl_40574.p1, internal, 122658, 122915 -recovered pasa_asmbl_40574.p1, internal, 123156, 123243 -recovered pasa_asmbl_40574.p1, internal, 123333, 123472 -recovered pasa_asmbl_40574.p1, internal, 125103, 125186 -recovered pasa_asmbl_40574.p1, internal, 125548, 125688 -recovered pasa_asmbl_40574.p1, internal, 125801, 125885 -recovered pasa_asmbl_40574.p1, internal, 126115, 126235 Valid prediction for GeneMark_model.13295_t Valid prediction for HiQ_model.g5413.t1 Valid prediction for GlimmerHMM_glimmerT_8141-T1 Valid prediction for snap_scaffold_3-snap.3083-T1 Valid prediction for pasa_asmbl_40576.p1 Valid prediction for Augustus_model.g5426.t1 Valid prediction for snap_scaffold_3-snap.3136-T1 Valid prediction for GlimmerHMM_glimmerT_8148-T1 Valid prediction for Augustus_model.g5430.t1 Valid prediction for CodingQuarry_transcript_46295-T1 Valid prediction for GeneMark_model.13283_t Valid prediction for GlimmerHMM_glimmerT_8165-T1 Valid prediction for snap_scaffold_3-snap.3090-T1 Valid prediction for GlimmerHMM_glimmerT_8174-T1 Valid prediction for GeneMark_model.13251_t Valid prediction for GeneMark_model.13277_t Valid prediction for Augustus_model.g5418.t1 Valid prediction for GeneMark_model.13289_t Valid prediction for snap_scaffold_3-snap.3132-T1 Valid prediction for snap_scaffold_3-snap.3087-T1 Valid prediction for GeneMark_model.13269_t Valid prediction for Augustus_model.g5423.t1 Valid prediction for snap_scaffold_3-snap.3106-T1 Valid prediction for snap_scaffold_3-snap.3111-T1 Valid prediction for GeneMark_model.13267_t Valid prediction for GeneMark_model.13285_t Valid prediction for GlimmerHMM_glimmerT_8149-T1 Valid prediction for GeneMark_model.13273_t Valid prediction for GlimmerHMM_glimmerT_8168-T1 Valid prediction for snap_scaffold_3-snap.3089-T1 Valid prediction for snap_scaffold_3-snap.3088-T1 Valid prediction for GlimmerHMM_glimmerT_8156-T1 Valid prediction for Augustus_model.g5416.t1 Valid prediction for HiQ_model.g5417.t1 Valid prediction for Augustus_model.g5434.t1 Valid prediction for snap_scaffold_3-snap.3113-T1 Valid prediction for GeneMark_model.13262_t Valid prediction for snap_scaffold_3-snap.3115-T1 Valid prediction for GeneMark_model.13264_t Couldn't classify 118874, 118992 Couldn't classify 119377, 119532 Sorry, prediction pasa_asmbl_40572.p1 fails validation. (GAG) AC 118874-118992 GT AGG (GCC) AG 119080-119185 GT AGG (AGT) AG 119377-119532 GT ACG -recovered pasa_asmbl_40572.p1, internal, 119080, 119185 -recovered pasa_asmbl_40572.p1, internal, 119377, 119532 Valid prediction for GeneMark_model.13297_t Couldn't classify 23739, 23891 Sorry, prediction pasa_asmbl_40569.p1 fails validation. (ATG) CA 19141-19181 GT AGG (CGG) AG 20151-20258 GT AGG (GAA) AG 21574-21700 GT AGG (GAG) AG 23060-23221 GT CGG (GTG) AG 23739-23891 GT GAG -recovered pasa_asmbl_40569.p1, initial, 19141, 19181 -recovered pasa_asmbl_40569.p1, internal, 20151, 20258 -recovered pasa_asmbl_40569.p1, internal, 21574, 21700 -recovered pasa_asmbl_40569.p1, internal, 23060, 23221 -recovered pasa_asmbl_40569.p1, internal, 23739, 23891 Valid prediction for Augustus_model.g5428.t1 Valid prediction for snap_scaffold_3-snap.3127-T1 Valid prediction for snap_scaffold_3-snap.3110-T1 Valid prediction for Augustus_model.g5432.t1 Valid prediction for GlimmerHMM_glimmerT_8173-T1 Valid prediction for snap_scaffold_3-snap.3124-T1 Valid prediction for GeneMark_model.13293_t Valid prediction for snap_scaffold_3-snap.3101-T1 Valid prediction for Augustus_model.g5419.t1 Valid prediction for snap_scaffold_3-snap.3098-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_8150-T1 Valid prediction for GlimmerHMM_glimmerT_8147-T1 Valid prediction for GlimmerHMM_glimmerT_8146-T1 Valid prediction for snap_scaffold_3-snap.3104-T1 Valid prediction for snap_scaffold_3-snap.3123-T1 Couldn't classify 27854, 27962 Sorry, prediction pasa_asmbl_40570.p1 fails validation. (GAC) AG 27854-27962 GT AGG (GCC) AG 29254-29360 GT AAG (GAA) AG 29707-29805 TG GAT -recovered pasa_asmbl_40570.p1, terminal, 29707, 29805 -recovered pasa_asmbl_40570.p1, internal, 27854, 27962 -recovered pasa_asmbl_40570.p1, internal, 29254, 29360 Valid prediction for snap_scaffold_3-snap.3118-T1 Valid prediction for snap_scaffold_3-snap.3086-T1 Valid prediction for snap_scaffold_3-snap.3091-T1 Valid prediction for CodingQuarry_transcript_46301-T1 Valid prediction for GlimmerHMM_glimmerT_8154-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.13247_t Valid prediction for GlimmerHMM_glimmerT_8157-T1 Valid prediction for GeneMark_model.13290_t Valid prediction for GeneMark_model.13279_t Valid prediction for snap_scaffold_3-snap.3121-T1 Valid prediction for Augustus_model.g5431.t1 Valid prediction for GlimmerHMM_glimmerT_8163-T1 Valid prediction for GlimmerHMM_glimmerT_8167-T1 Valid prediction for GeneMark_model.13255_t Valid prediction for snap_scaffold_3-snap.3133-T1 Valid prediction for snap_scaffold_3-snap.3109-T1 Valid prediction for CodingQuarry_transcript_46307-T1 Valid prediction for GeneMark_model.13266_t Valid prediction for snap_scaffold_3-snap.3099-T1 Valid prediction for Augustus_model.g5425.t1 Valid prediction for snap_scaffold_3-snap.3128-T1 Valid prediction for snap_scaffold_3-snap.3130-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_46303-T1 Valid prediction for snap_scaffold_3-snap.3084-T1 Valid prediction for snap_scaffold_3-snap.3119-T1 Valid prediction for GlimmerHMM_glimmerT_8162-T1 Valid prediction for GeneMark_model.13286_t Couldn't classify 124541, 124618 Couldn't classify 125895, 125942 Sorry, prediction pasa_asmbl_39439.p1 fails validation. (GAG) GA 124541-124618 GT TGG (GTG) AG 124730-124821 GT AGG (ATC) AG 124901-124980 GT AGG (TGG) AG 125140-125267 GT AGG (ACC) AG 125616-125786 GT AGG (ATT) AG 125895-125942 GA GAG -recovered pasa_asmbl_39439.p1, terminal, 124730, 124821 -recovered pasa_asmbl_39439.p1, internal, 124730, 124821 -recovered pasa_asmbl_39439.p1, internal, 124901, 124980 -recovered pasa_asmbl_39439.p1, internal, 125140, 125267 -recovered pasa_asmbl_39439.p1, internal, 125616, 125786 Valid prediction for GlimmerHMM_glimmerT_8143-T1 Valid prediction for GeneMark_model.13252_t Valid prediction for GeneMark_model.13296_t Valid prediction for snap_scaffold_3-snap.3108-T1 Valid prediction for GeneMark_model.13246_t Valid prediction for GlimmerHMM_glimmerT_8171-T1 Valid prediction for snap_scaffold_3-snap.3094-T1 Valid prediction for GlimmerHMM_glimmerT_8172-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_3-snap.3117-T1 Valid prediction for GeneMark_model.13294_t Valid prediction for GeneMark_model.13292_t Valid prediction for CodingQuarry_transcript_46305-T1 Valid prediction for CodingQuarry_transcript_46304-T1 Valid prediction for HiQ_model.g5415.t1 Valid prediction for HiQ_model.g5414.t1 Valid prediction for GeneMark_model.13278_t Couldn't classify 121633, 121753 Couldn't classify 123939, 124020 Sorry, prediction pasa_asmbl_39440.p1 fails validation. (AAC) CC 121633-121753 GT AGG (CCG) AG 122319-122476 GT AGG (GTG) AG 122652-122733 GT GGG (CGG) AG 123476-123595 GT AGG (ACT) AG 123679-123829 GT GCG (TCT) AG 123939-124020 CC AGC -recovered pasa_asmbl_39440.p1, internal, 122319, 122476 -recovered pasa_asmbl_39440.p1, internal, 122652, 122733 -recovered pasa_asmbl_39440.p1, internal, 123476, 123595 -recovered pasa_asmbl_39440.p1, internal, 123679, 123829 Valid prediction for GeneMark_model.13248_t Valid prediction for GlimmerHMM_glimmerT_8158-T1 Valid prediction for snap_scaffold_3-snap.3120-T1 Valid prediction for GeneMark_model.13284_t Valid prediction for GlimmerHMM_glimmerT_8142-T1 Valid prediction for snap_scaffold_3-snap.3126-T1 Valid prediction for snap_scaffold_3-snap.3135-T1 Valid prediction for snap_scaffold_3-snap.3125-T1 Couldn't classify 179587, 179728 Couldn't classify 180137, 180181 Sorry, prediction pasa_asmbl_39686.p1 fails validation. (ATC) TC 179587-179728 GT TGG (ACT) AG 179909-180024 GT AGG (AGC) AG 180137-180181 AC CGA -recovered pasa_asmbl_39686.p1, internal, 179909, 180024 Valid prediction for snap_scaffold_3-snap.3134-T1 Valid prediction for GlimmerHMM_glimmerT_8164-T1 Valid prediction for snap_scaffold_3-snap.3129-T1 Valid prediction for GlimmerHMM_glimmerT_8144-T1 Couldn't classify 184378, 184576 Couldn't classify 185239, 185381 Sorry, prediction pasa_asmbl_39432.p1 fails validation. (CCT) TG 184378-184576 GT AGG (ATG) AG 184720-184869 GT AGG (CGT) AG 185239-185381 CC CAC add_exon() Sorry, pasa_asmbl_39432.p1 184720-184869-initial-1 is invalid. -recovered pasa_asmbl_39432.p1, initial, 184720, 184869 add_exon() Sorry, pasa_asmbl_39432.p1 184720-184869-terminal-1 is invalid. -recovered pasa_asmbl_39432.p1, terminal, 184720, 184869 -recovered pasa_asmbl_39432.p1, internal, 184720, 184869 Valid prediction for GlimmerHMM_glimmerT_8160-T1 Valid prediction for GeneMark_model.13271_t Valid prediction for snap_scaffold_3-snap.3096-T1 Couldn't classify 185734, 185812 Sorry, prediction pasa_asmbl_39431.p1 fails validation. (GGC) AC 185734-185812 GT ACG (GAG) AG 185964-186109 GT AGG (CAC) AG 186530-186644 GT TGG (GCT) AG 187036-187278 GT CTG (TAC) AG 187402-187543 GT TGG (CCC) AG 187873-188074 GC AGG -recovered pasa_asmbl_39431.p1, terminal, 187873, 188074 -recovered pasa_asmbl_39431.p1, internal, 185964, 186109 -recovered pasa_asmbl_39431.p1, internal, 186530, 186644 -recovered pasa_asmbl_39431.p1, internal, 187036, 187278 -recovered pasa_asmbl_39431.p1, internal, 187402, 187543 -recovered pasa_asmbl_39431.p1, internal, 187873, 188074 Valid prediction for snap_scaffold_3-snap.3122-T1 Valid prediction for GlimmerHMM_glimmerT_8175-T1 Valid prediction for CodingQuarry_transcript_46296-T1 Valid prediction for GeneMark_model.13288_t Valid prediction for GeneMark_model.13276_t Valid prediction for GlimmerHMM_glimmerT_8152-T1 Couldn't classify 161940, 162800 Sorry, prediction pasa_asmbl_39436.p1 fails validation. (ATG) AA 155144-155242 GT AGG (GGA) AG 157258-157401 GT TTG (AAG) AG 157629-158654 GT AGG (CTG) AG 158753-158846 GT GGG (ATG) AG 159209-159475 GT TGG (ATA) AG 159595-159717 GT TAG (GTG) AG 159802-159890 GT AGG (GCC) AG 161940-162800 GA GAG -recovered pasa_asmbl_39436.p1, initial, 155144, 155242 add_exon() Sorry, pasa_asmbl_39436.p1 159209-159475-initial-1 is invalid. -recovered pasa_asmbl_39436.p1, initial, 159209, 159475 -recovered pasa_asmbl_39436.p1, internal, 157258, 157401 -recovered pasa_asmbl_39436.p1, internal, 157629, 158654 -recovered pasa_asmbl_39436.p1, internal, 158753, 158846 -recovered pasa_asmbl_39436.p1, internal, 159209, 159475 -recovered pasa_asmbl_39436.p1, internal, 159595, 159717 -recovered pasa_asmbl_39436.p1, internal, 159802, 159890 Valid prediction for snap_scaffold_3-snap.3085-T1 Couldn't classify 126136, 126210 Sorry, prediction pasa_asmbl_39437.p1 fails validation. (ATC) TC 126136-126210 GT AGG (GTG) AG 126326-126408 GT TGG (GAA) AG 126580-126654 GT CGG (GTT) AG 127126-127270 GC GAG -recovered pasa_asmbl_39437.p1, terminal, 127126, 127270 -recovered pasa_asmbl_39437.p1, internal, 126326, 126408 -recovered pasa_asmbl_39437.p1, internal, 126580, 126654 -recovered pasa_asmbl_39437.p1, internal, 127126, 127270 Valid prediction for GeneMark_model.13268_t Valid prediction for Augustus_model.g5421.t1 Valid prediction for GeneMark_model.13274_t Valid prediction for GlimmerHMM_glimmerT_8161-T1 Valid prediction for Augustus_model.g5422.t1 Valid prediction for CodingQuarry_transcript_46299-T1 Valid prediction for snap_scaffold_3-snap.3103-T1 Valid prediction for snap_scaffold_3-snap.3116-T1 Valid prediction for GeneMark_model.13260_t Valid prediction for Augustus_model.g5427.t1 Valid prediction for GeneMark_model.13263_t Valid prediction for Augustus_model.g5420.t1 Valid prediction for GlimmerHMM_glimmerT_8153-T1 Valid prediction for GlimmerHMM_glimmerT_8151-T1 Valid prediction for snap_scaffold_3-snap.3095-T1 Valid prediction for GeneMark_model.13272_t Valid prediction for CodingQuarry_transcript_46300-T1 Valid prediction for GlimmerHMM_glimmerT_8155-T1 Valid prediction for GeneMark_model.13254_t Valid prediction for GeneMark_model.13282_t Valid prediction for GeneMark_model.13253_t Valid prediction for GeneMark_model.13291_t Valid prediction for snap_scaffold_3-snap.3102-T1 Valid prediction for snap_scaffold_3-snap.3105-T1 Valid prediction for GeneMark_model.13280_t Valid prediction for pasa_asmbl_39424.p1 Valid prediction for GeneMark_model.13270_t Valid prediction for CodingQuarry_transcript_46306-T1 Valid prediction for snap_scaffold_3-snap.3093-T1 Valid prediction for Augustus_model.g5433.t1 Valid prediction for snap_scaffold_3-snap.3131-T1 Valid prediction for snap_scaffold_3-snap.3092-T1 Valid prediction for GeneMark_model.13249_t Valid prediction for Augustus_model.g5424.t1 Valid prediction for CodingQuarry_transcript_46297-T1 Valid prediction for snap_scaffold_3-snap.3100-T1 Valid prediction for GeneMark_model.13265_t Valid prediction for snap_scaffold_3-snap.3112-T1 Couldn't classify 166862, 167011 Sorry, prediction pasa_asmbl_39433.p1 fails validation. (CCC) CC 166862-167011 GT AGG (AAC) AG 167466-167552 GT AGG (GCT) AG 168375-168529 GT ATG (GTT) AG 168730-168887 GT AGG (GTT) AG 169012-169136 GT TGG (GAT) AG 169305-169388 GT AGG (GTC) AG 169581-169622 TT GAT -recovered pasa_asmbl_39433.p1, terminal, 169581, 169622 -recovered pasa_asmbl_39433.p1, internal, 167466, 167552 -recovered pasa_asmbl_39433.p1, internal, 168375, 168529 -recovered pasa_asmbl_39433.p1, internal, 168730, 168887 -recovered pasa_asmbl_39433.p1, internal, 169012, 169136 -recovered pasa_asmbl_39433.p1, internal, 169305, 169388 Valid prediction for GlimmerHMM_glimmerT_8145-T1 Valid prediction for GeneMark_model.13257_t Valid prediction for GlimmerHMM_glimmerT_8166-T1 Valid prediction for snap_scaffold_3-snap.3097-T1 Valid prediction for snap_scaffold_3-snap.3114-T1 Valid prediction for GlimmerHMM_glimmerT_8169-T1 Valid prediction for GeneMark_model.13261_t Valid prediction for GeneMark_model.13259_t Valid prediction for CodingQuarry_transcript_46298-T1 Valid prediction for snap_scaffold_3-snap.3107-T1 Valid prediction for GeneMark_model.13256_t Valid prediction for Augustus_model.g5429.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 89146, rend_intergenic: 89143 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18324, rend_intergenic: 11263 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50016, rend_intergenic: 42733 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97812, rend_intergenic: 94874 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105163, rend_intergenic: 98352 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106491, rend_intergenic: 105394 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112131, rend_intergenic: 108322 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126599, rend_intergenic: 117546 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136724, rend_intergenic: 127887 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140143, rend_intergenic: 136953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145629, rend_intergenic: 142821 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156219, rend_intergenic: 149439 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165696, rend_intergenic: 160935 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166910, rend_intergenic: 165982 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172912, rend_intergenic: 166957 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191835, rend_intergenic: 176997 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193439, rend_intergenic: 192270 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203461, rend_intergenic: 201280 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208074, rend_intergenic: 203955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218471, rend_intergenic: 215220 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230583, rend_intergenic: 223606 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 233539, rend_intergenic: 230903 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 235578 -exon list size: 952 building trellis 0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 1.2 1.3 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.2 3.4 3.5 3.6 3.7 3.8 3.9 4.0 4.1 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.9 5.0 5.1 5.2 5.3 5.5 5.6 5.7 5.8 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.2 7.3 7.4 7.5 7.7 7.8 7.9 8.0 8.1 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.9 9.0 9.1 9.2 9.3 9.4 9.5 9.6 9.7 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.6 10.7 10.8 10.9 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.7 11.8 11.9 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.4 13.5 13.6 13.7 13.8 13.9 14.0 14.2 14.3 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.1 15.2 15.3 15.4 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.2 16.4 16.5 16.6 16.7 16.8 16.9 17.0 17.1 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.6 18.7 18.8 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.2 20.3 20.4 20.5 20.6 20.8 20.9 21.0 21.1 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.9 22.0 22.1 22.2 22.3 22.4 22.5 22.6 22.7 22.9 23.0 23.1 23.2 23.3 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.7 24.8 24.9 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.4 26.5 26.6 26.7 26.8 26.9 27.0 27.1 27.3 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.1 28.2 28.3 28.4 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.2 29.4 29.5 29.6 29.7 29.8 29.9 30.0 30.1 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.6 31.7 31.8 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.2 33.3 33.4 33.5 33.6 33.8 33.9 34.0 34.1 34.2 34.3 34.4 34.5 34.6 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.4 35.5 35.6 35.7 35.8 36.0 36.1 36.2 36.3 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.7 37.8 37.9 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.4 39.5 39.6 39.7 39.8 39.9 40.0 40.1 40.3 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.1 41.2 41.3 41.4 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.2 42.3 42.5 42.6 42.7 42.8 42.9 43.0 43.1 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.5 44.7 44.8 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.6 45.7 45.8 45.9 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.8 46.9 47.0 47.1 47.2 47.3 47.4 47.5 47.6 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.4 48.5 48.6 48.7 48.8 49.0 49.1 49.2 49.3 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.7 50.8 50.9 51.0 51.2 51.3 51.4 51.5 51.6 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.4 52.5 52.6 52.7 52.8 52.9 53.0 53.1 53.2 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.1 54.2 54.3 54.4 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.2 55.3 55.5 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.9 57.0 57.1 57.2 57.3 57.4 57.5 57.7 57.8 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.6 58.7 58.8 58.9 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.7 59.9 60.0 60.1 60.2 60.3 60.4 60.5 60.6 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.4 61.5 61.6 61.7 61.8 61.9 62.1 62.2 62.3 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.7 63.8 63.9 64.0 64.2 64.3 64.4 64.5 64.6 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.4 65.5 65.6 65.7 65.8 65.9 66.0 66.1 66.2 66.4 66.5 66.6 66.7 66.8 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.2 68.3 68.4 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.9 70.0 70.1 70.2 70.3 70.4 70.5 70.6 70.8 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.6 71.7 71.8 71.9 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.7 72.9 73.0 73.1 73.2 73.3 73.4 73.5 73.6 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.4 74.5 74.6 74.7 74.8 74.9 75.1 75.2 75.3 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.7 76.8 76.9 77.0 77.1 77.3 77.4 77.5 77.6 77.7 77.8 77.9 78.0 78.1 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.9 79.0 79.1 79.2 79.4 79.5 79.6 79.7 79.8 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.2 81.3 81.4 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.9 83.0 83.1 83.2 83.3 83.4 83.5 83.6 83.8 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.6 84.7 84.8 84.9 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.7 85.8 86.0 86.1 86.2 86.3 86.4 86.5 86.6 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.4 87.5 87.6 87.7 87.8 87.9 88.1 88.2 88.3 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.1 89.2 89.3 89.4 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.3 90.4 90.5 90.6 90.7 90.8 90.9 91.0 91.1 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.9 92.0 92.1 92.2 92.3 92.5 92.6 92.7 92.8 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.2 94.3 94.4 94.5 94.7 94.8 94.9 95.0 95.1 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.9 96.0 96.1 96.2 96.3 96.4 96.5 96.6 96.8 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.6 97.7 97.8 97.9 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.7 98.8 99.0 99.1 99.2 99.3 99.4 99.5 99.6 99.7 99.8 99.9 -found 40 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 89146, rend_intergenic: 89143 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 18324, rend_intergenic: 11263 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50016, rend_intergenic: 42733 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97812, rend_intergenic: 94874 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 105163, rend_intergenic: 98352 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 106491, rend_intergenic: 105394 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112131, rend_intergenic: 108322 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126599, rend_intergenic: 117546 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136724, rend_intergenic: 127887 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140143, rend_intergenic: 136953 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 145629, rend_intergenic: 142821 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156219, rend_intergenic: 149439 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 165696, rend_intergenic: 160935 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166910, rend_intergenic: 165982 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 172912, rend_intergenic: 166957 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 191835, rend_intergenic: 176997 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193439, rend_intergenic: 192270 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203461, rend_intergenic: 201280 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208074, rend_intergenic: 203955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218471, rend_intergenic: 215220 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 230583, rend_intergenic: 223606 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 233539, rend_intergenic: 230903 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 26 predictions persist after filtering for low support