-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_15744931-15946707

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3-snap.3029-T1
Valid prediction for GeneMark_model.13185_t
Valid prediction for Augustus_model.g5378.t1
Valid prediction for GeneMark_model.13209_t
Valid prediction for GeneMark_model.13199_t
Valid prediction for snap_scaffold_3-snap.3034-T1
Couldn't classify 49147, 49262
Sorry, prediction pasa_asmbl_40811.p1 fails validation.
(ATG)	 AG	48227-48285	GT	TGG
(CAA)	 AG	48389-48503	GT	AGG
(GGT)	 AG	48733-48859	GT	AGG
(GAG)	 AG	49147-49262	AT	CTA
-recovered pasa_asmbl_40811.p1, initial, 48227, 48285
-recovered pasa_asmbl_40811.p1, internal, 48227, 48285
-recovered pasa_asmbl_40811.p1, internal, 48389, 48503
-recovered pasa_asmbl_40811.p1, internal, 48733, 48859
Couldn't classify 115225, 115398
Sorry, prediction pasa_asmbl_40548.p1 fails validation.
(CAC)	 CG	115225-115398	GT	GGG
(GAT)	 AG	115492-115610	GT	AGG
(CTC)	 AG	115697-115775	GT	AGG
(GTG)	 AG	116078-116173	GT	AGG
(GGT)	 AG	116627-116722	GT	AGG
(AGA)	 AG	117001-117102	GT	ATG
(GGG)	 AG	117210-117307	GT	AAG
(AGC)	 AG	117393-117497	GT	AGG
(GTG)	 AG	117578-117808	GT	AGG
(GTC)	 AG	118365-118458	GT	AGG
(AGT)	 AG	118689-118790	GT	AGG
(AGG)	 AG	118925-119007	GT	AAG
(AAG)	 AG	119182-119320	GT	AGG
(TTT)	 AG	119412-119468	GT	ATG
(GAT)	 AG	119668-119768	GT	AGG
(CGT)	 AG	119983-120094	GT	AGG
(GGT)	 AG	120561-120695	GT	TGG
(GAA)	 AG	120796-120846	GT	TGG
(GTT)	 AG	120952-121017	GT	CTG
(GCC)	 AG	121588-121680	GT	AGG
(TTG)	 AG	121758-121808	GT	CAG
(CCA)	 AG	121928-121971	GT	AGG
(TGA)	 AG	122210-122338	GT	AGG
(GAT)	 AG	122424-122517	GT	GGG
(GAT)	 AG	122814-122969	AT	GAA
add_exon() Sorry, pasa_asmbl_40548.p1 122210-122338-terminal-1 is invalid.
-recovered pasa_asmbl_40548.p1, terminal, 122210, 122338
-recovered pasa_asmbl_40548.p1, terminal, 122814, 122969
-recovered pasa_asmbl_40548.p1, internal, 115492, 115610
-recovered pasa_asmbl_40548.p1, internal, 115697, 115775
-recovered pasa_asmbl_40548.p1, internal, 116078, 116173
-recovered pasa_asmbl_40548.p1, internal, 116627, 116722
-recovered pasa_asmbl_40548.p1, internal, 117001, 117102
-recovered pasa_asmbl_40548.p1, internal, 117210, 117307
-recovered pasa_asmbl_40548.p1, internal, 117393, 117497
-recovered pasa_asmbl_40548.p1, internal, 117578, 117808
-recovered pasa_asmbl_40548.p1, internal, 118365, 118458
-recovered pasa_asmbl_40548.p1, internal, 118689, 118790
-recovered pasa_asmbl_40548.p1, internal, 118925, 119007
-recovered pasa_asmbl_40548.p1, internal, 119182, 119320
-recovered pasa_asmbl_40548.p1, internal, 119412, 119468
-recovered pasa_asmbl_40548.p1, internal, 119668, 119768
-recovered pasa_asmbl_40548.p1, internal, 119983, 120094
-recovered pasa_asmbl_40548.p1, internal, 120561, 120695
-recovered pasa_asmbl_40548.p1, internal, 120796, 120846
-recovered pasa_asmbl_40548.p1, internal, 120952, 121017
-recovered pasa_asmbl_40548.p1, internal, 121588, 121680
-recovered pasa_asmbl_40548.p1, internal, 121758, 121808
-recovered pasa_asmbl_40548.p1, internal, 121928, 121971
-recovered pasa_asmbl_40548.p1, internal, 122210, 122338
-recovered pasa_asmbl_40548.p1, internal, 122424, 122517
Valid prediction for GeneMark_model.13187_t
Valid prediction for GlimmerHMM_glimmerT_8097-T1
Valid prediction for GlimmerHMM_glimmerT_8098-T1
Valid prediction for GeneMark_model.13204_t
Valid prediction for Augustus_model.g5382.t1
Valid prediction for GlimmerHMM_glimmerT_8103-T1
Valid prediction for snap_scaffold_3-snap.3028-T1
Valid prediction for GeneMark_model.13194_t
Valid prediction for GeneMark_model.13180_t
Valid prediction for snap_scaffold_3-snap.3041-T1
Sorry, intron length (5) is less than minimum required (10)
Couldn't classify 122184, 122338
Sorry, prediction pasa_asmbl_40549.p1 fails validation.
(CCT)	 CA	122184-122338	GT	AGG
(GAT)	 AG	122424-122517	GT	GGG
(GAT)	 AG	122814-122969	AT	GAA
-recovered pasa_asmbl_40549.p1, terminal, 122814, 122969
-recovered pasa_asmbl_40549.p1, internal, 122424, 122517
Valid prediction for GlimmerHMM_glimmerT_8094-T1
Valid prediction for Augustus_model.g5371.t1
Valid prediction for GeneMark_model.13203_t
Valid prediction for Augustus_model.g5373.t1
Valid prediction for snap_scaffold_3-snap.3019-T1
Valid prediction for Augustus_model.g5375.t1
Valid prediction for Augustus_model.g5374.t1
Valid prediction for GeneMark_model.13214_t
Valid prediction for GeneMark_model.13202_t
Valid prediction for GeneMark_model.13181_t
Valid prediction for snap_scaffold_3-snap.3045-T1
Couldn't classify 56283, 56594
Sorry, prediction pasa_asmbl_40541.p2 fails validation.
(ATG)	 AG	56283-56594	TA	GGT
Valid prediction for GeneMark_model.13183_t
Valid prediction for HiQ_model.g5381.t1
Valid prediction for GeneMark_model.13200_t
Valid prediction for snap_scaffold_3-snap.3039-T1
Valid prediction for Augustus_model.g5377.t1
Valid prediction for snap_scaffold_3-snap.3047-T1
Valid prediction for snap_scaffold_3-snap.3021-T1
Valid prediction for snap_scaffold_3-snap.3025-T1
Valid prediction for GlimmerHMM_glimmerT_8102-T1
Valid prediction for GlimmerHMM_glimmerT_8100-T1
Valid prediction for snap_scaffold_3-snap.3023-T1
Valid prediction for GlimmerHMM_glimmerT_8105-T1
Valid prediction for GeneMark_model.13208_t
Valid prediction for GlimmerHMM_glimmerT_8106-T1
Valid prediction for snap_scaffold_3-snap.3031-T1
Valid prediction for GeneMark_model.13189_t
Valid prediction for GlimmerHMM_glimmerT_8089-T1
Valid prediction for Augustus_model.g5384.t1
Valid prediction for GlimmerHMM_glimmerT_8107-T1
Valid prediction for CodingQuarry_transcript_46289-T1
Valid prediction for snap_scaffold_3-snap.3030-T1
Valid prediction for GeneMark_model.13211_t
Couldn't classify 78692, 78793
Couldn't classify 85417, 85506
Sorry, prediction pasa_asmbl_40544.p1 fails validation.
(GCG)	 GG	78692-78793	GT	TGG
(AAT)	 AG	79640-79720	GT	AGG
(GTG)	 AG	81336-81430	GT	AGG
(TGG)	 AG	81823-81946	GT	AGG
(GTG)	 AG	82060-82153	GT	ACG
(ACC)	 AG	84519-84634	GT	AGG
(GCC)	 AG	85417-85506	CA	GCC
-recovered pasa_asmbl_40544.p1, internal, 79640, 79720
-recovered pasa_asmbl_40544.p1, internal, 81336, 81430
-recovered pasa_asmbl_40544.p1, internal, 81823, 81946
-recovered pasa_asmbl_40544.p1, internal, 82060, 82153
-recovered pasa_asmbl_40544.p1, internal, 84519, 84634
Valid prediction for snap_scaffold_3-snap.3017-T1
Valid prediction for GlimmerHMM_glimmerT_8096-T1
Valid prediction for snap_scaffold_3-snap.3040-T1
Valid prediction for snap_scaffold_3-snap.3033-T1
Valid prediction for GeneMark_model.13206_t
Valid prediction for Augustus_model.g5385.t1
Valid prediction for GeneMark_model.13186_t
Valid prediction for GeneMark_model.13195_t
Valid prediction for Augustus_model.g5376.t1
Valid prediction for GlimmerHMM_glimmerT_8108-T1
Valid prediction for snap_scaffold_3-snap.3024-T1
Valid prediction for snap_scaffold_3-snap.3036-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_3-snap.3043-T1
Valid prediction for HiQ_model.g5372.t1
Valid prediction for CodingQuarry_transcript_46288-T1
Valid prediction for GeneMark_model.13207_t
Valid prediction for GlimmerHMM_glimmerT_8113-T1
Couldn't classify 187287, 187493
Sorry, prediction pasa_asmbl_39392.p1 fails validation.
(AAA)	 CG	187287-187493	GT	AGG
(TAT)	 AG	187803-187904	GT	AGG
(TTG)	 AG	188050-188204	GT	AGG
(GGA)	 AG	188334-188462	GT	GTG
(GTA)	 AG	188551-188829	GT	TGG
(CCT)	 AG	189101-189218	TC	GAT
-recovered pasa_asmbl_39392.p1, terminal, 189101, 189218
-recovered pasa_asmbl_39392.p1, internal, 187803, 187904
-recovered pasa_asmbl_39392.p1, internal, 188050, 188204
-recovered pasa_asmbl_39392.p1, internal, 188334, 188462
-recovered pasa_asmbl_39392.p1, internal, 188551, 188829
Valid prediction for GeneMark_model.13196_t
Valid prediction for GeneMark_model.13193_t
Valid prediction for snap_scaffold_3-snap.3014-T1
Valid prediction for GlimmerHMM_glimmerT_8090-T1
Valid prediction for snap_scaffold_3-snap.3046-T1
Valid prediction for snap_scaffold_3-snap.3048-T1
Valid prediction for snap_scaffold_3-snap.3018-T1
Valid prediction for Augustus_model.g5383.t1
Valid prediction for Augustus_model.g5389.t1
Valid prediction for GlimmerHMM_glimmerT_8111-T1
Valid prediction for snap_scaffold_3-snap.3038-T1
Valid prediction for GlimmerHMM_glimmerT_8093-T1
Valid prediction for GlimmerHMM_glimmerT_8101-T1
Valid prediction for snap_scaffold_3-snap.3027-T1
Valid prediction for CodingQuarry_transcript_46287-T1
Valid prediction for snap_scaffold_3-snap.3016-T1
Valid prediction for Augustus_model.g5386.t1
Valid prediction for snap_scaffold_3-snap.3032-T1
Valid prediction for GeneMark_model.13201_t
Valid prediction for GeneMark_model.13216_t
Valid prediction for snap_scaffold_3-snap.3042-T1
Valid prediction for snap_scaffold_3-snap.3049-T1
Valid prediction for Augustus_model.g5367.t1
Valid prediction for GlimmerHMM_glimmerT_8112-T1
Valid prediction for snap_scaffold_3-snap.3037-T1
Valid prediction for CodingQuarry_transcript_46286-T1
Valid prediction for GeneMark_model.13182_t
Valid prediction for CodingQuarry_transcript_46284-T1
Valid prediction for snap_scaffold_3-snap.3020-T1
Valid prediction for snap_scaffold_3-snap.3044-T1
Valid prediction for Augustus_model.g5379.t1
Valid prediction for GeneMark_model.13178_t
Valid prediction for GlimmerHMM_glimmerT_8092-T1
Valid prediction for pasa_asmbl_39395.p1
Valid prediction for GeneMark_model.13198_t
Valid prediction for GlimmerHMM_glimmerT_8099-T1
Valid prediction for Augustus_model.g5370.t1
Valid prediction for snap_scaffold_3-snap.3035-T1
Valid prediction for GeneMark_model.13210_t
Valid prediction for Augustus_model.g5369.t1
Valid prediction for GlimmerHMM_glimmerT_8104-T1
Valid prediction for Augustus_model.g5388.t1
Valid prediction for GeneMark_model.13215_t
Valid prediction for HiQ_model.g5380.t1
Valid prediction for GeneMark_model.13213_t
Valid prediction for CodingQuarry_transcript_46283-T1
Valid prediction for snap_scaffold_3-snap.3013-T1
Valid prediction for GeneMark_model.13192_t
Valid prediction for Augustus_model.g5387.t1
Valid prediction for GlimmerHMM_glimmerT_8110-T1
Valid prediction for GeneMark_model.13176_t
Couldn't classify 15033, 15206
Sorry, prediction pasa_asmbl_39403.p1 fails validation.
(AGG)	 GC	15033-15206	GT	ATG
(ATC)	 AG	17104-17271	GT	AGG
(ATC)	 AG	17576-17640	GT	AGG
(GAC)	 AG	19175-19272	GT	AGG
(GGG)	 AG	20805-21634	AA	AAA
-recovered pasa_asmbl_39403.p1, terminal, 20805, 21634
-recovered pasa_asmbl_39403.p1, internal, 17104, 17271
-recovered pasa_asmbl_39403.p1, internal, 17576, 17640
-recovered pasa_asmbl_39403.p1, internal, 19175, 19272
Valid prediction for GlimmerHMM_glimmerT_8091-T1
Couldn't classify 9562, 9758
Couldn't classify 11689, 11791
Sorry, prediction pasa_asmbl_39411.p1 fails validation.
(TCA)	 AT	9562-9758	GT	AGG
(GCG)	 AG	11689-11791	TC	GGT
Valid prediction for snap_scaffold_3-snap.3022-T1
Valid prediction for GeneMark_model.13175_t
Couldn't classify 88046, 88108
Sorry, prediction pasa_asmbl_39736.p1 fails validation.
(TTT)	 CC	88046-88108	GT	AGG
(CGT)	 AG	88509-88729	GT	TTG
(CAC)	 AG	89670-89809	GT	AGG
(GAT)	 AG	89985-90138	GT	AAG
(AGA)	 AG	91032-91120	GT	CAG
(GAA)	 AG	93601-93677	GT	AGG
(CCC)	 AG	93874-94033	GT	AGG
(ATG)	 AG	94637-94790	GT	AAG
(TTA)	 AG	95231-95307	GT	GGG
(GTG)	 AG	95521-95597	GT	AGG
(GCC)	 AG	95704-95843	GT	AAG
(GTT)	 AG	97568-97622	GT	AGG
(GTG)	 AG	97745-97888	GT	GGG
(ATC)	 AG	99166-99207	CC	AAC
-recovered pasa_asmbl_39736.p1, initial, 94637, 94790
-recovered pasa_asmbl_39736.p1, terminal, 99166, 99207
-recovered pasa_asmbl_39736.p1, internal, 88509, 88729
-recovered pasa_asmbl_39736.p1, internal, 89670, 89809
-recovered pasa_asmbl_39736.p1, internal, 89985, 90138
-recovered pasa_asmbl_39736.p1, internal, 91032, 91120
-recovered pasa_asmbl_39736.p1, internal, 93601, 93677
-recovered pasa_asmbl_39736.p1, internal, 93874, 94033
-recovered pasa_asmbl_39736.p1, internal, 94637, 94790
-recovered pasa_asmbl_39736.p1, internal, 95231, 95307
-recovered pasa_asmbl_39736.p1, internal, 95521, 95597
-recovered pasa_asmbl_39736.p1, internal, 95704, 95843
-recovered pasa_asmbl_39736.p1, internal, 97568, 97622
-recovered pasa_asmbl_39736.p1, internal, 97745, 97888
Valid prediction for GlimmerHMM_glimmerT_8095-T1
Valid prediction for GlimmerHMM_glimmerT_8109-T1
Valid prediction for GeneMark_model.13190_t
Valid prediction for Augustus_model.g5368.t1
Valid prediction for GeneMark_model.13188_t
Couldn't classify 183210, 183254
Couldn't classify 184181, 184279
Sorry, prediction pasa_asmbl_39393.p1 fails validation.
(CGC)	 AA	183210-183254	GT	AGG
(GAC)	 AG	183343-183419	GT	AAG
(TGG)	 AG	183535-183622	GT	AGG
(GTG)	 AG	183718-183798	GT	GGG
(GAG)	 AG	184010-184102	GT	AGG
(GCC)	 AG	184181-184279	AA	CCA
-recovered pasa_asmbl_39393.p1, internal, 183343, 183419
-recovered pasa_asmbl_39393.p1, internal, 183535, 183622
-recovered pasa_asmbl_39393.p1, internal, 183718, 183798
-recovered pasa_asmbl_39393.p1, internal, 184010, 184102
Valid prediction for GeneMark_model.13179_t
Valid prediction for pasa_asmbl_39397.p1
Valid prediction for GeneMark_model.13212_t
Valid prediction for snap_scaffold_3-snap.3050-T1
Valid prediction for snap_scaffold_3-snap.3026-T1
Valid prediction for snap_scaffold_3-snap.3015-T1
Valid prediction for GeneMark_model.13177_t
Couldn't classify 164599, 164651
Couldn't classify 164748, 164748
Sorry, prediction CodingQuarry_transcript_46285-T1 fails validation.
(ATG)	 AG	161508-161664	GT	GGG
(GTG)	 AG	162018-162722	GT	CAG
(GTG)	 AG	163014-163709	GT	CAG
(TGA)	 AG	164031-164114	GT	GAG
(CGT)	 AG	164330-164490	GT	CGG
(ATC)	 AG	164599-164651	TA	TAT
(GGC)	 CA	164748-164748	GC	AGG
-recovered CodingQuarry_transcript_46285-T1, initial, 161508, 161664
-recovered CodingQuarry_transcript_46285-T1, internal, 161508, 161664
-recovered CodingQuarry_transcript_46285-T1, internal, 162018, 162722
-recovered CodingQuarry_transcript_46285-T1, internal, 163014, 163709
-recovered CodingQuarry_transcript_46285-T1, internal, 164031, 164114
-recovered CodingQuarry_transcript_46285-T1, internal, 164330, 164490

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 41001, rend_intergenic: 35292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79367, rend_intergenic: 75666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113230, rend_intergenic: 105710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122969, rend_intergenic: 115129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136372, rend_intergenic: 131958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170225, rend_intergenic: 166529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 201777
-exon list size: 589


building trellis

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45.0    
45.2    
45.3    
45.5    
45.7    
45.9    
46.0    
46.2    
46.4    
46.5    
46.7    
46.9    
47.0    
47.2    
47.4    
47.5    
47.7    
47.9    
48.1    
48.2    
48.4    
48.6    
48.7    
48.9    
49.1    
49.2    
49.4    
49.6    
49.7    
49.9    
50.1    
50.3    
50.4    
50.6    
50.8    
50.9    
51.1    
51.3    
51.4    
51.6    
51.8    
51.9    
52.1    
52.3    
52.5    
52.6    
52.8    
53.0    
53.1    
53.3    
53.5    
53.6    
53.8    
54.0    
54.1    
54.3    
54.5    
54.7    
54.8    
55.0    
55.2    
55.3    
55.5    
55.7    
55.8    
56.0    
56.2    
56.3    
56.5    
56.7    
56.9    
57.0    
57.2    
57.4    
57.5    
57.7    
57.9    
58.0    
58.2    
58.4    
58.5    
58.7    
58.9    
59.1    
59.2    
59.4    
59.6    
59.7    
59.9    
60.1    
60.2    
60.4    
60.6    
60.7    
60.9    
61.1    
61.3    
61.4    
61.6    
61.8    
61.9    
62.1    
62.3    
62.4    
62.6    
62.8    
62.9    
63.1    
63.3    
63.5    
63.6    
63.8    
64.0    
64.1    
64.3    
64.5    
64.6    
64.8    
65.0    
65.1    
65.3    
65.5    
65.7    
65.8    
66.0    
66.2    
66.3    
66.5    
66.7    
66.8    
67.0    
67.2    
67.3    
67.5    
67.7    
67.9    
68.0    
68.2    
68.4    
68.5    
68.7    
68.9    
69.0    
69.2    
69.4    
69.5    
69.7    
69.9    
70.1    
70.2    
70.4    
70.6    
70.7    
70.9    
71.1    
71.2    
71.4    
71.6    
71.7    
71.9    
72.1    
72.3    
72.4    
72.6    
72.8    
72.9    
73.1    
73.3    
73.4    
73.6    
73.8    
73.9    
74.1    
74.3    
74.5    
74.6    
74.8    
75.0    
75.1    
75.3    
75.5    
75.6    
75.8    
76.0    
76.1    
76.3    
76.5    
76.6    
76.8    
77.0    
77.2    
77.3    
77.5    
77.7    
77.8    
78.0    
78.2    
78.3    
78.5    
78.7    
78.8    
79.0    
79.2    
79.4    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.5    
80.7    
80.9    
81.0    
81.2    
81.4    
81.6    
81.7    
81.9    
82.1    
82.2    
82.4    
82.6    
82.7    
82.9    
83.1    
83.2    
83.4    
83.6    
83.8    
83.9    
84.1    
84.3    
84.4    
84.6    
84.8    
84.9    
85.1    
85.3    
85.4    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.6    
86.8    
87.0    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.3    
88.5    
88.7    
88.8    
89.0    
89.2    
89.3    
89.5    
89.7    
89.8    
90.0    
90.2    
90.4    
90.5    
90.7    
90.9    
91.0    
91.2    
91.4    
91.5    
91.7    
91.9    
92.0    
92.2    
92.4    
92.6    
92.7    
92.9    
93.1    
93.2    
93.4    
93.6    
93.7    
93.9    
94.1    
94.2    
94.4    
94.6    
94.8    
94.9    
95.1    
95.3    
95.4    
95.6    
95.8    
95.9    
96.1    
96.3    
96.4    
96.6    
96.8    
97.0    
97.1    
97.3    
97.5    
97.6    
97.8    
98.0    
98.1    
98.3    
98.5    
98.6    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 41001, rend_intergenic: 35292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79367, rend_intergenic: 75666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113230, rend_intergenic: 105710  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122969, rend_intergenic: 115129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136372, rend_intergenic: 131958  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170225, rend_intergenic: 166529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support