-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_1520337-1773832 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.10183_t Valid prediction for snap_scaffold_3-snap.409-T1 Valid prediction for snap_scaffold_3-snap.401-T1 Couldn't classify 244203, 244373 Sorry, prediction pasa_asmbl_39824.p1 fails validation. (ATG) GG 233553-233555 GT TGG (GAG) AG 235160-235204 GT CGG (ATC) AG 235851-235901 GT GGG (TCA) AG 236373-236408 GT GGG (GGT) AG 237541-237606 GT ACG (AGC) AG 237705-237746 GT GGG (AGC) AG 238144-238221 GT CGG (AGC) AG 238639-238698 GT CGG (GCA) AG 239120-239203 GT AGG (GCC) AG 240337-240399 GT GCG (CCC) AG 241122-241193 GT TGG (GAT) AG 241643-241741 GT ACG (AGC) AG 242744-242770 GT AGG (GGT) AG 242875-243000 GT AAG (GAG) AG 243487-243558 GT AGG (GAC) AG 244203-244373 GT AGG -recovered pasa_asmbl_39824.p1, initial, 233553, 233555 -recovered pasa_asmbl_39824.p1, internal, 235160, 235204 -recovered pasa_asmbl_39824.p1, internal, 235851, 235901 -recovered pasa_asmbl_39824.p1, internal, 236373, 236408 -recovered pasa_asmbl_39824.p1, internal, 237541, 237606 -recovered pasa_asmbl_39824.p1, internal, 237705, 237746 -recovered pasa_asmbl_39824.p1, internal, 238144, 238221 -recovered pasa_asmbl_39824.p1, internal, 238639, 238698 -recovered pasa_asmbl_39824.p1, internal, 239120, 239203 -recovered pasa_asmbl_39824.p1, internal, 240337, 240399 -recovered pasa_asmbl_39824.p1, internal, 241122, 241193 -recovered pasa_asmbl_39824.p1, internal, 241643, 241741 -recovered pasa_asmbl_39824.p1, internal, 242744, 242770 -recovered pasa_asmbl_39824.p1, internal, 242875, 243000 -recovered pasa_asmbl_39824.p1, internal, 243487, 243558 -recovered pasa_asmbl_39824.p1, internal, 244203, 244373 Valid prediction for HiQ_model.g4071.t1 Couldn't classify 51802, 51850 Sorry, prediction pasa_asmbl_39817.p1 fails validation. (GCC) GG 51802-51850 GT AGG (ATG) AG 52040-52411 GT ACG (ACT) AG 53007-53100 GT AGG (GTT) AG 53314-53407 AT GAA add_exon() Sorry, pasa_asmbl_39817.p1 52040-52411-initial-1 is invalid. -recovered pasa_asmbl_39817.p1, initial, 52040, 52411 -recovered pasa_asmbl_39817.p1, terminal, 53314, 53407 -recovered pasa_asmbl_39817.p1, internal, 52040, 52411 -recovered pasa_asmbl_39817.p1, internal, 53007, 53100 Valid prediction for GlimmerHMM_glimmerT_6201-T1 Valid prediction for GeneMark_model.10154_t Valid prediction for GlimmerHMM_glimmerT_6176-T1 Valid prediction for snap_scaffold_3-snap.425-T1 Valid prediction for snap_scaffold_3-snap.400-T1 Valid prediction for GlimmerHMM_glimmerT_6199-T1 Valid prediction for snap_scaffold_3-snap.381-T1 Valid prediction for GlimmerHMM_glimmerT_6187-T1 Valid prediction for snap_scaffold_3-snap.415-T1 Valid prediction for CodingQuarry_transcript_45973-T1 Valid prediction for GlimmerHMM_glimmerT_6197-T1 Valid prediction for GlimmerHMM_glimmerT_6184-T1 Valid prediction for GeneMark_model.10171_t Valid prediction for GeneMark_model.10159_t Valid prediction for snap_scaffold_3-snap.383-T1 Valid prediction for CodingQuarry_transcript_45975-T1 Valid prediction for GlimmerHMM_glimmerT_6169-T1 Valid prediction for HiQ_model.g4050.t1 Valid prediction for snap_scaffold_3-snap.387-T1 Valid prediction for snap_scaffold_3-snap.420-T1 Valid prediction for snap_scaffold_3-snap.429-T1 Valid prediction for CodingQuarry_transcript_45970-T1 Valid prediction for snap_scaffold_3-snap.422-T1 Valid prediction for GlimmerHMM_glimmerT_6192-T1 Valid prediction for GeneMark_model.10176_t Valid prediction for GeneMark_model.10140_t Valid prediction for GeneMark_model.10180_t Valid prediction for Augustus_model.g4056.t1 Valid prediction for snap_scaffold_3-snap.382-T1 Valid prediction for snap_scaffold_3-snap.380-T1 Valid prediction for GeneMark_model.10167_t Valid prediction for pasa_asmbl_39813.p1 Valid prediction for GeneMark_model.10173_t Valid prediction for snap_scaffold_3-snap.398-T1 Couldn't classify 249115, 249723 Sorry, prediction pasa_asmbl_39837.p1 fails validation. (GTG) TG 249115-249723 TT AGT Valid prediction for snap_scaffold_3-snap.417-T1 Valid prediction for snap_scaffold_3-snap.389-T1 Valid prediction for GeneMark_model.10142_t Valid prediction for pasa_asmbl_39814.p1 Valid prediction for Augustus_model.g4061.t1 Valid prediction for Augustus_model.g4070.t1 Valid prediction for snap_scaffold_3-snap.399-T1 Valid prediction for Augustus_model.g4069.t1 Valid prediction for GlimmerHMM_glimmerT_6194-T1 Valid prediction for GlimmerHMM_glimmerT_6175-T1 Valid prediction for GeneMark_model.10161_t Valid prediction for GlimmerHMM_glimmerT_6178-T1 Valid prediction for Augustus_model.g4067.t1 Valid prediction for GeneMark_model.10164_t Valid prediction for GeneMark_model.10144_t Valid prediction for Augustus_model.g4054.t1 Valid prediction for GlimmerHMM_glimmerT_6182-T1 Couldn't classify 8535, 8536 Sorry, prediction CodingQuarry_transcript_45964-T1 fails validation. (ATG) AG 3135-3198 GT GGG (CGC) AG 4961-5079 GT AGG (GCC) AG 5238-5360 GT AGG (GTG) AG 5929-6087 GT AGG (GAC) AG 6439-6637 GT AGG (ATG) AG 6838-6940 GT AGG (GCT) AG 7050-7164 GT AGG (TAC) AG 7545-7666 GT AAG (CCT) AG 7897-8222 GT GTG (AGG) AG 8535-8536 GG AGG -recovered CodingQuarry_transcript_45964-T1, initial, 3135, 3198 add_exon() Sorry, CodingQuarry_transcript_45964-T1 6838-6940-initial-1 is invalid. -recovered CodingQuarry_transcript_45964-T1, initial, 6838, 6940 -recovered CodingQuarry_transcript_45964-T1, internal, 3135, 3198 -recovered CodingQuarry_transcript_45964-T1, internal, 4961, 5079 -recovered CodingQuarry_transcript_45964-T1, internal, 5238, 5360 -recovered CodingQuarry_transcript_45964-T1, internal, 5929, 6087 -recovered CodingQuarry_transcript_45964-T1, internal, 6439, 6637 -recovered CodingQuarry_transcript_45964-T1, internal, 6838, 6940 -recovered CodingQuarry_transcript_45964-T1, internal, 7050, 7164 -recovered CodingQuarry_transcript_45964-T1, internal, 7545, 7666 -recovered CodingQuarry_transcript_45964-T1, internal, 7897, 8222 Valid prediction for Augustus_model.g4062.t1 Valid prediction for snap_scaffold_3-snap.424-T1 Valid prediction for GlimmerHMM_glimmerT_6189-T1 Valid prediction for snap_scaffold_3-snap.372-T1 Valid prediction for snap_scaffold_3-snap.419-T1 Valid prediction for snap_scaffold_3-snap.406-T1 Valid prediction for GlimmerHMM_glimmerT_6180-T1 Valid prediction for snap_scaffold_3-snap.414-T1 Couldn't classify 8535, 8536 Sorry, prediction pasa_asmbl_39811.p1 fails validation. (ATG) AG 2454-3198 GT GGG (CGC) AG 4961-5079 GT AGG (GCC) AG 5238-5360 GT AGG (GTG) AG 5929-6087 GT AGG (GAC) AG 6439-6637 GT AGG (ATG) AG 6838-6940 GT AGG (GCT) AG 7050-7164 GT AGG (TAC) AG 7545-7666 GT AAG (CCT) AG 7897-8222 GT GTG (AGG) AG 8535-8536 GG AGG -recovered pasa_asmbl_39811.p1, initial, 2454, 3198 add_exon() Sorry, pasa_asmbl_39811.p1 6838-6940-initial-1 is invalid. -recovered pasa_asmbl_39811.p1, initial, 6838, 6940 -recovered pasa_asmbl_39811.p1, internal, 2454, 3198 -recovered pasa_asmbl_39811.p1, internal, 4961, 5079 -recovered pasa_asmbl_39811.p1, internal, 5238, 5360 -recovered pasa_asmbl_39811.p1, internal, 5929, 6087 -recovered pasa_asmbl_39811.p1, internal, 6439, 6637 -recovered pasa_asmbl_39811.p1, internal, 6838, 6940 -recovered pasa_asmbl_39811.p1, internal, 7050, 7164 -recovered pasa_asmbl_39811.p1, internal, 7545, 7666 -recovered pasa_asmbl_39811.p1, internal, 7897, 8222 Couldn't classify 48473, 48497 Sorry, prediction pasa_asmbl_40785.p3 fails validation. (GGC) CC 48473-48497 GT AGG (AGG) AG 48819-48961 GT TGG (CCC) AG 49152-49304 GT AGG (GTG) AG 49656-49724 AA GAA -recovered pasa_asmbl_40785.p3, terminal, 49656, 49724 -recovered pasa_asmbl_40785.p3, internal, 48819, 48961 -recovered pasa_asmbl_40785.p3, internal, 49152, 49304 Valid prediction for HiQ_model.g4072.t1 Couldn't classify 99796, 99849 Sorry, prediction GeneMark_model.10158_t fails validation. (AGG) AG 99796-99849 GT GAG (AGA) AG 99873-99911 GT GGG (TGA) AG 99933-99995 GT AAG (AGA) AG 100018-100032 GT AGG (GGA) AG 100059-100110 GA AAG -recovered GeneMark_model.10158_t, terminal, 100059, 100110 -recovered GeneMark_model.10158_t, internal, 99796, 99849 -recovered GeneMark_model.10158_t, internal, 99873, 99911 -recovered GeneMark_model.10158_t, internal, 99933, 99995 -recovered GeneMark_model.10158_t, internal, 100018, 100032 Valid prediction for Augustus_model.g4066.t1 Couldn't classify 244804, 244872 Couldn't classify 247100, 248583 Sorry, prediction pasa_asmbl_39834.p1 fails validation. (CAC) TG 244804-244872 GT CCG (GAG) AG 245232-245324 GT GGG (GCC) AG 245559-245651 GT AGG (AAA) AG 245976-246117 GT GGG (GGA) AG 246845-247078 GT AGG (GTG) AG 247100-248583 AG GGA -recovered pasa_asmbl_39834.p1, internal, 245232, 245324 -recovered pasa_asmbl_39834.p1, internal, 245559, 245651 -recovered pasa_asmbl_39834.p1, internal, 245976, 246117 -recovered pasa_asmbl_39834.p1, internal, 246845, 247078 Valid prediction for GeneMark_model.10156_t Valid prediction for GeneMark_model.10178_t Valid prediction for snap_scaffold_3-snap.427-T1 Valid prediction for GeneMark_model.10151_t Valid prediction for GeneMark_model.10185_t Valid prediction for snap_scaffold_3-snap.384-T1 Valid prediction for snap_scaffold_3-snap.374-T1 Valid prediction for CodingQuarry_transcript_45971-T1 Valid prediction for GlimmerHMM_glimmerT_6188-T1 Valid prediction for snap_scaffold_3-snap.412-T1 Valid prediction for GlimmerHMM_glimmerT_6196-T1 Valid prediction for GeneMark_model.10145_t Valid prediction for CodingQuarry_transcript_45976-T1 Valid prediction for snap_scaffold_3-snap.396-T1 Valid prediction for GlimmerHMM_glimmerT_6190-T1 Valid prediction for GeneMark_model.10136_t Valid prediction for GeneMark_model.10147_t Valid prediction for CodingQuarry_transcript_45968-T1 Valid prediction for snap_scaffold_3-snap.392-T1 Valid prediction for Augustus_model.g4057.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.10163_t Valid prediction for GeneMark_model.10155_t Valid prediction for GeneMark_model.10146_t Valid prediction for GlimmerHMM_glimmerT_6179-T1 Valid prediction for GeneMark_model.10172_t Valid prediction for GlimmerHMM_glimmerT_6173-T1 Valid prediction for snap_scaffold_3-snap.408-T1 Valid prediction for HiQ_model.g4055.t1 Couldn't classify 236724, 236936 Couldn't classify 237113, 237212 Sorry, prediction CodingQuarry_transcript_45967-T1 fails validation. (ATG) GC 233315-233489 GT TGG (GAT) AG 234075-234202 GT AGG (GGC) AG 234753-234862 GT CAG (CTA) AG 235050-235237 GT AGG (GTA) AG 235977-236219 GT ATG (TGT) AG 236321-236601 GT CGG (GAG) AG 236724-236936 TG TAT (AAG) GC 237113-237212 GT AGG (AGC) AG 237431-237624 GT CGG (GAG) AG 237809-237940 GC AAG -recovered CodingQuarry_transcript_45967-T1, initial, 233315, 233489 -recovered CodingQuarry_transcript_45967-T1, terminal, 237809, 237940 -recovered CodingQuarry_transcript_45967-T1, internal, 234075, 234202 -recovered CodingQuarry_transcript_45967-T1, internal, 234753, 234862 -recovered CodingQuarry_transcript_45967-T1, internal, 235050, 235237 -recovered CodingQuarry_transcript_45967-T1, internal, 235977, 236219 -recovered CodingQuarry_transcript_45967-T1, internal, 236321, 236601 -recovered CodingQuarry_transcript_45967-T1, internal, 237431, 237624 -recovered CodingQuarry_transcript_45967-T1, internal, 237809, 237940 Valid prediction for Augustus_model.g4063.t1 Valid prediction for snap_scaffold_3-snap.428-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_3-snap.402-T1 Couldn't classify 176452, 176481 Sorry, prediction GeneMark_model.10157_t fails validation. (AGG) AG 176452-176481 GC GGG (AAG) AG 176504-176524 GT TTG (TGG) AG 176817-176825 GT AGG (AAG) AG 176945-177049 GT AGG (GGA) AG 177072-177167 GT GAG (ACG) AG 177210-177458 GT AGG (GAC) AG 178881-179661 GT AGG (TGA) AG 180519-180521 CA GAC -recovered GeneMark_model.10157_t, terminal, 180519, 180521 -recovered GeneMark_model.10157_t, internal, 176452, 176481 -recovered GeneMark_model.10157_t, internal, 176504, 176524 -recovered GeneMark_model.10157_t, internal, 176817, 176825 -recovered GeneMark_model.10157_t, internal, 176945, 177049 -recovered GeneMark_model.10157_t, internal, 177072, 177167 -recovered GeneMark_model.10157_t, internal, 177210, 177458 -recovered GeneMark_model.10157_t, internal, 178881, 179661 Valid prediction for GlimmerHMM_glimmerT_6183-T1 Couldn't classify 111976, 112038 Sorry, prediction pasa_asmbl_38681.p1 fails validation. (GGA) AG 111976-112038 GT CTG (GGG) AG 112164-112214 GT GGG (GGT) AG 112454-112489 GT AGG (GGT) AG 112675-112737 GT GGG (GGT) AG 113070-113132 GT ACG (GGT) AG 113452-113484 GT TGG (CAA) AG 113585-113621 GT CCG (CCT) AG 113719-113730 GT TGG (GCA) AG 114011-114504 GT AGG (ATC) AG 114891-114993 GT CGG (ACT) AG 115289-115990 GT CAG (TTG) AG 116104-116200 GT GAG (GAA) AG 116294-116349 GT AGG (AAT) AG 116735-116995 GT AAG (AAG) AG 117187-117261 GT GGG (CAC) AG 119258-119314 GT TGG (CGG) AG 120524-120709 GT AGG (CAG) AG 121292-121332 GA AGG -recovered pasa_asmbl_38681.p1, terminal, 121292, 121332 -recovered pasa_asmbl_38681.p1, internal, 111976, 112038 -recovered pasa_asmbl_38681.p1, internal, 112164, 112214 -recovered pasa_asmbl_38681.p1, internal, 112454, 112489 -recovered pasa_asmbl_38681.p1, internal, 112675, 112737 -recovered pasa_asmbl_38681.p1, internal, 113070, 113132 -recovered pasa_asmbl_38681.p1, internal, 113452, 113484 -recovered pasa_asmbl_38681.p1, internal, 113585, 113621 -recovered pasa_asmbl_38681.p1, internal, 113719, 113730 -recovered pasa_asmbl_38681.p1, internal, 114011, 114504 -recovered pasa_asmbl_38681.p1, internal, 114891, 114993 -recovered pasa_asmbl_38681.p1, internal, 115289, 115990 -recovered pasa_asmbl_38681.p1, internal, 116104, 116200 -recovered pasa_asmbl_38681.p1, internal, 116294, 116349 -recovered pasa_asmbl_38681.p1, internal, 116735, 116995 -recovered pasa_asmbl_38681.p1, internal, 117187, 117261 -recovered pasa_asmbl_38681.p1, internal, 119258, 119314 -recovered pasa_asmbl_38681.p1, internal, 120524, 120709 Valid prediction for snap_scaffold_3-snap.405-T1 Valid prediction for snap_scaffold_3-snap.390-T1 Valid prediction for GlimmerHMM_glimmerT_6177-T1 Valid prediction for snap_scaffold_3-snap.378-T1 Valid prediction for GeneMark_model.10138_t Valid prediction for GeneMark_model.10181_t Valid prediction for Augustus_model.g4053.t1 Valid prediction for Augustus_model.g4068.t1 Couldn't classify 240504, 240827 Sorry, prediction pasa_asmbl_38674.p1 fails validation. (ATG) CG 239534-239822 GT AGG (TTC) AG 240110-240225 GT AGG (ACT) AG 240504-240827 CC CTC -recovered pasa_asmbl_38674.p1, initial, 239534, 239822 -recovered pasa_asmbl_38674.p1, internal, 240110, 240225 Valid prediction for Augustus_model.g4051.t1 Valid prediction for GeneMark_model.10169_t Valid prediction for GlimmerHMM_glimmerT_6191-T1 Valid prediction for snap_scaffold_3-snap.426-T1 Valid prediction for snap_scaffold_3-snap.377-T1 Valid prediction for snap_scaffold_3-snap.411-T1 Valid prediction for GeneMark_model.10160_t Valid prediction for snap_scaffold_3-snap.391-T1 Valid prediction for Augustus_model.g4058.t1 Valid prediction for GeneMark_model.10177_t Valid prediction for snap_scaffold_3-snap.393-T1 Valid prediction for GeneMark_model.10179_t Valid prediction for CodingQuarry_transcript_45974-T1 Valid prediction for snap_scaffold_3-snap.397-T1 Valid prediction for Augustus_model.g4060.t1 Couldn't classify 241197, 241571 Sorry, prediction pasa_asmbl_38673.p1 fails validation. (GGG) CC 241197-241571 CG AGC Valid prediction for GlimmerHMM_glimmerT_6172-T1 Valid prediction for Augustus_model.g4065.t1 Valid prediction for pasa_asmbl_38679.p1 Valid prediction for GeneMark_model.10184_t Valid prediction for snap_scaffold_3-snap.418-T1 Valid prediction for snap_scaffold_3-snap.403-T1 Valid prediction for GlimmerHMM_glimmerT_6185-T1 Valid prediction for GeneMark_model.10182_t Valid prediction for snap_scaffold_3-snap.394-T1 Valid prediction for GeneMark_model.10165_t Couldn't classify 111976, 112038 Sorry, prediction GeneMark_model.10166_t fails validation. (GGA) AG 111976-112038 GT CTG (GGG) AG 112164-112214 GT GGG (GAC) AG 112482-112489 GT AGG (GGT) AG 112675-112737 GT GGG (GAC) AG 113471-113484 GT TGG (GCA) AG 114011-114504 GT AGG (ATC) AG 114891-114993 GT CGG (ACT) AG 115289-115990 GT CAG (AAT) AG 116735-117003 AC AAA -recovered GeneMark_model.10166_t, terminal, 116735, 117003 -recovered GeneMark_model.10166_t, internal, 111976, 112038 -recovered GeneMark_model.10166_t, internal, 112164, 112214 -recovered GeneMark_model.10166_t, internal, 112482, 112489 -recovered GeneMark_model.10166_t, internal, 112675, 112737 -recovered GeneMark_model.10166_t, internal, 113471, 113484 -recovered GeneMark_model.10166_t, internal, 114011, 114504 -recovered GeneMark_model.10166_t, internal, 114891, 114993 -recovered GeneMark_model.10166_t, internal, 115289, 115990 Valid prediction for GlimmerHMM_glimmerT_6170-T1 Valid prediction for snap_scaffold_3-snap.379-T1 Valid prediction for snap_scaffold_3-snap.410-T1 Valid prediction for snap_scaffold_3-snap.388-T1 Valid prediction for GeneMark_model.10141_t Valid prediction for GlimmerHMM_glimmerT_6193-T1 Valid prediction for GlimmerHMM_glimmerT_6171-T1 Valid prediction for GeneMark_model.10153_t Valid prediction for GeneMark_model.10143_t Valid prediction for GlimmerHMM_glimmerT_6174-T1 Valid prediction for snap_scaffold_3-snap.373-T1 Valid prediction for HiQ_model.g4052.t1 Valid prediction for GeneMark_model.10152_t Valid prediction for GeneMark_model.10139_t Valid prediction for snap_scaffold_3-snap.421-T1 Valid prediction for snap_scaffold_3-snap.416-T1 Valid prediction for snap_scaffold_3-snap.407-T1 Valid prediction for snap_scaffold_3-snap.375-T1 Valid prediction for snap_scaffold_3-snap.423-T1 Valid prediction for GeneMark_model.10150_t Valid prediction for GeneMark_model.10148_t Valid prediction for snap_scaffold_3-snap.413-T1 Valid prediction for snap_scaffold_3-snap.376-T1 Valid prediction for GlimmerHMM_glimmerT_6195-T1 Valid prediction for GlimmerHMM_glimmerT_6181-T1 Valid prediction for Augustus_model.g4064.t1 Valid prediction for GlimmerHMM_glimmerT_6198-T1 Valid prediction for GeneMark_model.10175_t Valid prediction for GlimmerHMM_glimmerT_6186-T1 Valid prediction for CodingQuarry_transcript_45969-T1 Valid prediction for GeneMark_model.10174_t Valid prediction for GeneMark_model.10162_t Valid prediction for snap_scaffold_3-snap.385-T1 Valid prediction for GeneMark_model.10168_t Valid prediction for GeneMark_model.10170_t Valid prediction for GeneMark_model.10149_t Valid prediction for snap_scaffold_3-snap.395-T1 Valid prediction for snap_scaffold_3-snap.404-T1 Valid prediction for snap_scaffold_3-snap.386-T1 Valid prediction for GlimmerHMM_glimmerT_6200-T1 Valid prediction for Augustus_model.g4059.t1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7670, rend_intergenic: 4854 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 9216, rend_intergenic: 7931 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38171, rend_intergenic: 29946 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44572, rend_intergenic: 42183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47339, rend_intergenic: 45751 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53407, rend_intergenic: 47397 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57739, rend_intergenic: 55711 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65812, rend_intergenic: 62277 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74648, rend_intergenic: 67294 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120164, rend_intergenic: 117147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155670, rend_intergenic: 141197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203903, rend_intergenic: 197818 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211360, rend_intergenic: 209071 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217430, rend_intergenic: 215020 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241828, rend_intergenic: 238522 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249723, rend_intergenic: 242810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 253496 -exon list size: 826 building trellis 0.1 0.2 0.4 0.5 0.6 0.7 0.8 1.0 1.1 1.2 1.3 1.4 1.6 1.7 1.8 1.9 2.1 2.2 2.3 2.4 2.5 2.7 2.8 2.9 3.0 3.1 3.3 3.4 3.5 3.6 3.7 3.9 4.0 4.1 4.2 4.3 4.5 4.6 4.7 4.8 5.0 5.1 5.2 5.3 5.4 5.6 5.7 5.8 5.9 6.0 6.2 6.3 6.4 6.5 6.6 6.8 6.9 7.0 7.1 7.2 7.4 7.5 7.6 7.7 7.9 8.0 8.1 8.2 8.3 8.5 8.6 8.7 8.8 8.9 9.1 9.2 9.3 9.4 9.5 9.7 9.8 9.9 10.0 10.1 10.3 10.4 10.5 10.6 10.7 10.9 11.0 11.1 11.2 11.4 11.5 11.6 11.7 11.8 12.0 12.1 12.2 12.3 12.4 12.6 12.7 12.8 12.9 13.0 13.2 13.3 13.4 13.5 13.6 13.8 13.9 14.0 14.1 14.3 14.4 14.5 14.6 14.7 14.9 15.0 15.1 15.2 15.3 15.5 15.6 15.7 15.8 15.9 16.1 16.2 16.3 16.4 16.5 16.7 16.8 16.9 17.0 17.1 17.3 17.4 17.5 17.6 17.8 17.9 18.0 18.1 18.2 18.4 18.5 18.6 18.7 18.8 19.0 19.1 19.2 19.3 19.4 19.6 19.7 19.8 19.9 20.0 20.2 20.3 20.4 20.5 20.7 20.8 20.9 21.0 21.1 21.3 21.4 21.5 21.6 21.7 21.9 22.0 22.1 22.2 22.3 22.5 22.6 22.7 22.8 22.9 23.1 23.2 23.3 23.4 23.6 23.7 23.8 23.9 24.0 24.2 24.3 24.4 24.5 24.6 24.8 24.9 25.0 25.1 25.2 25.4 25.5 25.6 25.7 25.8 26.0 26.1 26.2 26.3 26.4 26.6 26.7 26.8 26.9 27.1 27.2 27.3 27.4 27.5 27.7 27.8 27.9 28.0 28.1 28.3 28.4 28.5 28.6 28.7 28.9 29.0 29.1 29.2 29.3 29.5 29.6 29.7 29.8 30.0 30.1 30.2 30.3 30.4 30.6 30.7 30.8 30.9 31.0 31.2 31.3 31.4 31.5 31.6 31.8 31.9 32.0 32.1 32.2 32.4 32.5 32.6 32.7 32.9 33.0 33.1 33.2 33.3 33.5 33.6 33.7 33.8 33.9 34.1 34.2 34.3 34.4 34.5 34.7 34.8 34.9 35.0 35.1 35.3 35.4 35.5 35.6 35.7 35.9 36.0 36.1 36.2 36.4 36.5 36.6 36.7 36.8 37.0 37.1 37.2 37.3 37.4 37.6 37.7 37.8 37.9 38.0 38.2 38.3 38.4 38.5 38.6 38.8 38.9 39.0 39.1 39.3 39.4 39.5 39.6 39.7 39.9 40.0 40.1 40.2 40.3 40.5 40.6 40.7 40.8 40.9 41.1 41.2 41.3 41.4 41.5 41.7 41.8 41.9 42.0 42.1 42.3 42.4 42.5 42.6 42.8 42.9 43.0 43.1 43.2 43.4 43.5 43.6 43.7 43.8 44.0 44.1 44.2 44.3 44.4 44.6 44.7 44.8 44.9 45.0 45.2 45.3 45.4 45.5 45.7 45.8 45.9 46.0 46.1 46.3 46.4 46.5 46.6 46.7 46.9 47.0 47.1 47.2 47.3 47.5 47.6 47.7 47.8 47.9 48.1 48.2 48.3 48.4 48.6 48.7 48.8 48.9 49.0 49.2 49.3 49.4 49.5 49.6 49.8 49.9 50.0 50.1 50.2 50.4 50.5 50.6 50.7 50.8 51.0 51.1 51.2 51.3 51.4 51.6 51.7 51.8 51.9 52.1 52.2 52.3 52.4 52.5 52.7 52.8 52.9 53.0 53.1 53.3 53.4 53.5 53.6 53.7 53.9 54.0 54.1 54.2 54.3 54.5 54.6 54.7 54.8 55.0 55.1 55.2 55.3 55.4 55.6 55.7 55.8 55.9 56.0 56.2 56.3 56.4 56.5 56.6 56.8 56.9 57.0 57.1 57.2 57.4 57.5 57.6 57.7 57.9 58.0 58.1 58.2 58.3 58.5 58.6 58.7 58.8 58.9 59.1 59.2 59.3 59.4 59.5 59.7 59.8 59.9 60.0 60.1 60.3 60.4 60.5 60.6 60.7 60.9 61.0 61.1 61.2 61.4 61.5 61.6 61.7 61.8 62.0 62.1 62.2 62.3 62.4 62.6 62.7 62.8 62.9 63.0 63.2 63.3 63.4 63.5 63.6 63.8 63.9 64.0 64.1 64.3 64.4 64.5 64.6 64.7 64.9 65.0 65.1 65.2 65.3 65.5 65.6 65.7 65.8 65.9 66.1 66.2 66.3 66.4 66.5 66.7 66.8 66.9 67.0 67.1 67.3 67.4 67.5 67.6 67.8 67.9 68.0 68.1 68.2 68.4 68.5 68.6 68.7 68.8 69.0 69.1 69.2 69.3 69.4 69.6 69.7 69.8 69.9 70.0 70.2 70.3 70.4 70.5 70.7 70.8 70.9 71.0 71.1 71.3 71.4 71.5 71.6 71.7 71.9 72.0 72.1 72.2 72.3 72.5 72.6 72.7 72.8 72.9 73.1 73.2 73.3 73.4 73.6 73.7 73.8 73.9 74.0 74.2 74.3 74.4 74.5 74.6 74.8 74.9 75.0 75.1 75.2 75.4 75.5 75.6 75.7 75.8 76.0 76.1 76.2 76.3 76.4 76.6 76.7 76.8 76.9 77.1 77.2 77.3 77.4 77.5 77.7 77.8 77.9 78.0 78.1 78.3 78.4 78.5 78.6 78.7 78.9 79.0 79.1 79.2 79.3 79.5 79.6 79.7 79.8 80.0 80.1 80.2 80.3 80.4 80.6 80.7 80.8 80.9 81.0 81.2 81.3 81.4 81.5 81.6 81.8 81.9 82.0 82.1 82.2 82.4 82.5 82.6 82.7 82.9 83.0 83.1 83.2 83.3 83.5 83.6 83.7 83.8 83.9 84.1 84.2 84.3 84.4 84.5 84.7 84.8 84.9 85.0 85.1 85.3 85.4 85.5 85.6 85.7 85.9 86.0 86.1 86.2 86.4 86.5 86.6 86.7 86.8 87.0 87.1 87.2 87.3 87.4 87.6 87.7 87.8 87.9 88.0 88.2 88.3 88.4 88.5 88.6 88.8 88.9 89.0 89.1 89.3 89.4 89.5 89.6 89.7 89.9 90.0 90.1 90.2 90.3 90.5 90.6 90.7 90.8 90.9 91.1 91.2 91.3 91.4 91.5 91.7 91.8 91.9 92.0 92.1 92.3 92.4 92.5 92.6 92.8 92.9 93.0 93.1 93.2 93.4 93.5 93.6 93.7 93.8 94.0 94.1 94.2 94.3 94.4 94.6 94.7 94.8 94.9 95.0 95.2 95.3 95.4 95.5 95.7 95.8 95.9 96.0 96.1 96.3 96.4 96.5 96.6 96.7 96.9 97.0 97.1 97.2 97.3 97.5 97.6 97.7 97.8 97.9 98.1 98.2 98.3 98.4 98.6 98.7 98.8 98.9 99.0 99.2 99.3 99.4 99.5 99.6 99.8 99.9 -found 36 predictions from path traversal Error with prediction: snap lend_intergenic: 7670, rend_intergenic: 4854 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 9216, rend_intergenic: 7931 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38171, rend_intergenic: 29946 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 44572, rend_intergenic: 42183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 47339, rend_intergenic: 45751 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 53407, rend_intergenic: 47397 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57739, rend_intergenic: 55711 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65812, rend_intergenic: 62277 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74648, rend_intergenic: 67294 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 120164, rend_intergenic: 117147 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155670, rend_intergenic: 141197 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203903, rend_intergenic: 197818 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211360, rend_intergenic: 209071 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 217430, rend_intergenic: 215020 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241828, rend_intergenic: 238522 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249723, rend_intergenic: 242810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 28 predictions persist after filtering for low support