-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_14576106-14852268 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_46274-T1 Valid prediction for GlimmerHMM_glimmerT_7944-T1 Couldn't classify 76012, 76156 Couldn't classify 78395, 78431 Sorry, prediction pasa_asmbl_40499.p1 fails validation. (TGC) GG 76012-76156 GT AGG (GTT) AG 76672-76797 GT GAG (GTC) AG 77292-77419 GT AGG (CTG) AG 77547-77638 GT AGG (GGA) AG 77910-78044 GT AGG (TGT) AG 78395-78431 AA ACA -recovered pasa_asmbl_40499.p1, internal, 76672, 76797 -recovered pasa_asmbl_40499.p1, internal, 77292, 77419 -recovered pasa_asmbl_40499.p1, internal, 77547, 77638 -recovered pasa_asmbl_40499.p1, internal, 77910, 78044 Valid prediction for pasa_asmbl_40514.p1 Valid prediction for snap_scaffold_3-snap.2795-T1 Valid prediction for GlimmerHMM_glimmerT_7945-T1 Valid prediction for Augustus_model.g5292.t1 Valid prediction for snap_scaffold_3-snap.2800-T1 Valid prediction for GlimmerHMM_glimmerT_7953-T1 Valid prediction for GeneMark_model.12941_t Valid prediction for CodingQuarry_transcript_46265-T1 Valid prediction for GeneMark_model.12925_t Valid prediction for snap_scaffold_3-snap.2796-T1 Valid prediction for GeneMark_model.12926_t Valid prediction for GeneMark_model.12946_t Valid prediction for GeneMark_model.12928_t Valid prediction for HiQ_model.g5290.t1 Valid prediction for snap_scaffold_3-snap.2827-T1 Valid prediction for GlimmerHMM_glimmerT_7960-T1 Valid prediction for GeneMark_model.12921_t Valid prediction for pasa_asmbl_40507.p1 Valid prediction for HiQ_model.g5277.t1 Couldn't classify 79507, 79626 Couldn't classify 80575, 80820 Sorry, prediction pasa_asmbl_40500.p1 fails validation. (CTG) CC 79507-79626 GT AGG (GAC) AG 79999-80220 GT ATG (ACT) AG 80575-80820 CC TCC -recovered pasa_asmbl_40500.p1, internal, 79999, 80220 Valid prediction for snap_scaffold_3-snap.2792-T1 Valid prediction for GlimmerHMM_glimmerT_7946-T1 Couldn't classify 59455, 59651 Sorry, prediction Augustus_model.g5276.t1 fails validation. (AGT) AG 59455-59651 GT AGG (GTG) AG 61739-61981 GT GGG (GGC) AG 62232-62303 GT AGG (GGC) AG 62648-62744 GT AGG (GTC) AG 63006-63079 GT ATG (GAT) AG 65156-65294 GT CAG (GCA) AG 65424-65500 GT AGG (ATC) AG 67129-67333 GT CAG (CCA) AG 67751-67915 GT TTG (GTC) AG 68636-68794 GT AGG (CGT) AG 68982-69186 GT GGG (GAT) AG 69929-70074 GT AGG (GAG) AG 70605-70691 GT AGG (ACG) AG 74018-74137 GT CGG (TGG) AG 74575-74656 GT AGG (GGG) AG 74747-74864 GT CGG (AAA) AG 75100-75304 GT CGG (GCC) AG 75526-75679 GT AGG (GTT) AG 75984-76156 GT AGG (GTT) AG 76672-76797 GT GAG (GTC) AG 77292-77419 GT AGG (CTG) AG 77547-77638 GT AGG (GGA) AG 77910-78044 GT AGG (TGT) AG 78395-78484 GT GTG (GCT) AG 78607-78703 GT TGG (GAG) AG 78939-79131 GT TGG (CCA) AG 79352-79626 GT AGG (GAC) AG 79999-80220 GT ATG (ACT) AG 80575-80766 GT AGG (GTG) AG 84340-84546 GT ACG (GCA) AG 84694-84831 GT AGG (GAG) AG 84935-85113 GT AGG (GAG) AG 85252-85394 GT CGG (CTG) AG 85976-86076 GT AGG (GCT) AG 86191-86409 GT GGG (GTG) AG 86538-86760 GT TGG (GCA) AG 87698-87816 GT AGG (GGT) AG 87910-87997 GT AGG (GCA) AG 88087-88309 GT AGG (GTG) AG 88459-88603 GT AGG (GTG) AG 89019-89228 GT AGG (GCC) AG 89994-90049 GT AGG (GCC) AG 90164-90279 GT AGG (ATG) AG 90486-90583 GT AGG (GTC) AG 91649-91765 GT AGG (ATC) AG 92509-92649 GT ACG (AGT) AG 94068-94145 GT AGG (GAG) AG 95170-95394 GT AGG (GTG) AG 96260-96392 GT GGG (AGC) AG 96619-96744 GT AGG (GTG) AG 98537-98755 GT GAG (GCG) AG 100535-102190 GT AGG (GAT) AG 102301-102470 GT AGG (GTG) AG 102648-102892 GT AGG (GCA) AG 103121-103288 GT AGG (TCT) AG 103522-103679 GT AGG (AAG) AG 104074-104273 GT AGG (GCG) AG 104461-104610 GT AGG (GAG) AG 104798-104958 GT AGG (GTG) AG 105571-105727 GT AGG (GAG) AG 105976-106200 GT GGG (AAC) AG 106341-106406 GT AGG (GTG) AG 106946-107185 GT AGG (GTG) AG 107481-107570 GT AGG (GCT) AG 107744-107824 GT AGG (GTG) AG 108313-108579 GT AGG (GTG) AG 108744-109027 GT AGG (CTA) AG 110144-110240 GT CTG (GGC) AG 110335-110454 GT GGG (TTG) AG 110617-110718 GT TGG (CCC) AG 110839-110967 GT AGG (GTC) AG 111043-111175 GT TGG (GTA) AG 111851-111954 GT AGG (GAG) AG 112155-112343 GT AGG (CTG) AG 112593-112700 GT AGG (AAC) AG 113072-113281 GT AGG (GCT) AG 113396-113503 GT AGG (ATG) AG 113809-113974 GT AGG (GTC) AG 114456-114571 AC AAA add_exon() Sorry, Augustus_model.g5276.t1 90486-90583-initial-1 is invalid. -recovered Augustus_model.g5276.t1, initial, 90486, 90583 -recovered Augustus_model.g5276.t1, initial, 113809, 113974 add_exon() Sorry, Augustus_model.g5276.t1 69929-70074-terminal-2 is invalid. -recovered Augustus_model.g5276.t1, terminal, 69929, 70074 add_exon() Sorry, Augustus_model.g5276.t1 75984-76156-terminal-2 is invalid. -recovered Augustus_model.g5276.t1, terminal, 75984, 76156 add_exon() Sorry, Augustus_model.g5276.t1 84935-85113-terminal-2 is invalid. -recovered Augustus_model.g5276.t1, terminal, 84935, 85113 add_exon() Sorry, Augustus_model.g5276.t1 87910-87997-terminal-3 is invalid. -recovered Augustus_model.g5276.t1, terminal, 87910, 87997 add_exon() Sorry, Augustus_model.g5276.t1 90164-90279-terminal-2 is invalid. -recovered Augustus_model.g5276.t1, terminal, 90164, 90279 -recovered Augustus_model.g5276.t1, terminal, 114456, 114571 -recovered Augustus_model.g5276.t1, internal, 59455, 59651 -recovered Augustus_model.g5276.t1, internal, 61739, 61981 -recovered Augustus_model.g5276.t1, internal, 62232, 62303 -recovered Augustus_model.g5276.t1, internal, 62648, 62744 -recovered Augustus_model.g5276.t1, internal, 63006, 63079 -recovered Augustus_model.g5276.t1, internal, 65156, 65294 -recovered Augustus_model.g5276.t1, internal, 65424, 65500 -recovered Augustus_model.g5276.t1, internal, 67129, 67333 -recovered Augustus_model.g5276.t1, internal, 67751, 67915 -recovered Augustus_model.g5276.t1, internal, 68636, 68794 -recovered Augustus_model.g5276.t1, internal, 68982, 69186 -recovered Augustus_model.g5276.t1, internal, 69929, 70074 -recovered Augustus_model.g5276.t1, internal, 70605, 70691 -recovered Augustus_model.g5276.t1, internal, 74018, 74137 -recovered Augustus_model.g5276.t1, internal, 74575, 74656 -recovered Augustus_model.g5276.t1, internal, 74747, 74864 -recovered Augustus_model.g5276.t1, internal, 75100, 75304 -recovered Augustus_model.g5276.t1, internal, 75526, 75679 -recovered Augustus_model.g5276.t1, internal, 75984, 76156 -recovered Augustus_model.g5276.t1, internal, 76672, 76797 -recovered Augustus_model.g5276.t1, internal, 77292, 77419 -recovered Augustus_model.g5276.t1, internal, 77547, 77638 -recovered Augustus_model.g5276.t1, internal, 77910, 78044 -recovered Augustus_model.g5276.t1, internal, 78395, 78484 -recovered Augustus_model.g5276.t1, internal, 78607, 78703 -recovered Augustus_model.g5276.t1, internal, 78939, 79131 -recovered Augustus_model.g5276.t1, internal, 79352, 79626 -recovered Augustus_model.g5276.t1, internal, 79999, 80220 -recovered Augustus_model.g5276.t1, internal, 80575, 80766 -recovered Augustus_model.g5276.t1, internal, 84340, 84546 -recovered Augustus_model.g5276.t1, internal, 84694, 84831 -recovered Augustus_model.g5276.t1, internal, 84935, 85113 -recovered Augustus_model.g5276.t1, internal, 85252, 85394 -recovered Augustus_model.g5276.t1, internal, 85976, 86076 -recovered Augustus_model.g5276.t1, internal, 86191, 86409 -recovered Augustus_model.g5276.t1, internal, 86538, 86760 -recovered Augustus_model.g5276.t1, internal, 87698, 87816 -recovered Augustus_model.g5276.t1, internal, 87910, 87997 -recovered Augustus_model.g5276.t1, internal, 88087, 88309 -recovered Augustus_model.g5276.t1, internal, 88459, 88603 -recovered Augustus_model.g5276.t1, internal, 89019, 89228 -recovered Augustus_model.g5276.t1, internal, 89994, 90049 -recovered Augustus_model.g5276.t1, internal, 90164, 90279 -recovered Augustus_model.g5276.t1, internal, 90486, 90583 -recovered Augustus_model.g5276.t1, internal, 91649, 91765 -recovered Augustus_model.g5276.t1, internal, 92509, 92649 -recovered Augustus_model.g5276.t1, internal, 94068, 94145 -recovered Augustus_model.g5276.t1, internal, 95170, 95394 -recovered Augustus_model.g5276.t1, internal, 96260, 96392 -recovered Augustus_model.g5276.t1, internal, 96619, 96744 -recovered Augustus_model.g5276.t1, internal, 98537, 98755 -recovered Augustus_model.g5276.t1, internal, 100535, 102190 -recovered Augustus_model.g5276.t1, internal, 102301, 102470 -recovered Augustus_model.g5276.t1, internal, 102648, 102892 -recovered Augustus_model.g5276.t1, internal, 103121, 103288 -recovered Augustus_model.g5276.t1, internal, 103522, 103679 -recovered Augustus_model.g5276.t1, internal, 104074, 104273 -recovered Augustus_model.g5276.t1, internal, 104461, 104610 -recovered Augustus_model.g5276.t1, internal, 104798, 104958 -recovered Augustus_model.g5276.t1, internal, 105571, 105727 -recovered Augustus_model.g5276.t1, internal, 105976, 106200 -recovered Augustus_model.g5276.t1, internal, 106341, 106406 -recovered Augustus_model.g5276.t1, internal, 106946, 107185 -recovered Augustus_model.g5276.t1, internal, 107481, 107570 -recovered Augustus_model.g5276.t1, internal, 107744, 107824 -recovered Augustus_model.g5276.t1, internal, 108313, 108579 -recovered Augustus_model.g5276.t1, internal, 108744, 109027 -recovered Augustus_model.g5276.t1, internal, 110144, 110240 -recovered Augustus_model.g5276.t1, internal, 110335, 110454 -recovered Augustus_model.g5276.t1, internal, 110617, 110718 -recovered Augustus_model.g5276.t1, internal, 110839, 110967 -recovered Augustus_model.g5276.t1, internal, 111043, 111175 -recovered Augustus_model.g5276.t1, internal, 111851, 111954 -recovered Augustus_model.g5276.t1, internal, 112155, 112343 -recovered Augustus_model.g5276.t1, internal, 112593, 112700 -recovered Augustus_model.g5276.t1, internal, 113072, 113281 -recovered Augustus_model.g5276.t1, internal, 113396, 113503 -recovered Augustus_model.g5276.t1, internal, 113809, 113974 Valid prediction for snap_scaffold_3-snap.2808-T1 Couldn't classify 67762, 67915 Couldn't classify 68982, 69073 Sorry, prediction pasa_asmbl_40498.p1 fails validation. (AGA) GC 67762-67915 GT TTG (GTC) AG 68636-68794 GT AGG (CGT) AG 68982-69073 GG CCG -recovered pasa_asmbl_40498.p1, internal, 68636, 68794 Valid prediction for snap_scaffold_3-snap.2828-T1 Valid prediction for HiQ_model.g5281.t1 Valid prediction for pasa_asmbl_40511.p1 Valid prediction for GlimmerHMM_glimmerT_7958-T1 Valid prediction for Augustus_model.g5284.t1 Valid prediction for GlimmerHMM_glimmerT_7948-T1 Valid prediction for GeneMark_model.12949_t Valid prediction for snap_scaffold_3-snap.2812-T1 Valid prediction for pasa_asmbl_40508.p1 Valid prediction for GeneMark_model.12931_t Couldn't classify 147702, 148490 Sorry, prediction pasa_asmbl_40513.p1 fails validation. (CAG) GA 147702-148490 CT GAC Valid prediction for snap_scaffold_3-snap.2816-T1 Valid prediction for snap_scaffold_3-snap.2822-T1 Valid prediction for CodingQuarry_transcript_46268-T1 Valid prediction for snap_scaffold_3-snap.2806-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GeneMark_model.12951_t Couldn't classify 255718, 255792 Sorry, prediction pasa_asmbl_40518.p1 fails validation. (AAG) CC 255718-255792 GT AGG (GTG) AG 256175-256427 GT AGG (CTA) AG 256611-256858 GT AGG (GTG) AG 257775-257864 GT AGG (GGG) AG 258188-258292 GT TGG (GTG) AG 258464-258596 GT AGG (GCC) AG 259110-259201 GT AGG (AAG) AG 259328-259438 GT AGG (AGC) AG 260186-260305 GT GAG (GGT) AG 260586-260636 GT GAG (CAG) AG 262317-262540 GT AGG (CCC) AG 263081-263233 GT AGG (TAA) AG 265656-265813 GT AGG (ACC) AG 266679-266858 GT GGG (CGA) AG 268112-268273 GT AGG (GTA) AG 268465-268621 GT GGG (GCC) AG 269053-269152 GG GAG -recovered pasa_asmbl_40518.p1, terminal, 269053, 269152 -recovered pasa_asmbl_40518.p1, internal, 256175, 256427 -recovered pasa_asmbl_40518.p1, internal, 256611, 256858 -recovered pasa_asmbl_40518.p1, internal, 257775, 257864 -recovered pasa_asmbl_40518.p1, internal, 258188, 258292 -recovered pasa_asmbl_40518.p1, internal, 258464, 258596 -recovered pasa_asmbl_40518.p1, internal, 259110, 259201 -recovered pasa_asmbl_40518.p1, internal, 259328, 259438 -recovered pasa_asmbl_40518.p1, internal, 260186, 260305 -recovered pasa_asmbl_40518.p1, internal, 260586, 260636 -recovered pasa_asmbl_40518.p1, internal, 262317, 262540 -recovered pasa_asmbl_40518.p1, internal, 263081, 263233 -recovered pasa_asmbl_40518.p1, internal, 265656, 265813 -recovered pasa_asmbl_40518.p1, internal, 266679, 266858 -recovered pasa_asmbl_40518.p1, internal, 268112, 268273 -recovered pasa_asmbl_40518.p1, internal, 268465, 268621 Valid prediction for GlimmerHMM_glimmerT_7961-T1 Valid prediction for GeneMark_model.12944_t Valid prediction for pasa_asmbl_40515.p1 Valid prediction for GeneMark_model.12922_t Valid prediction for snap_scaffold_3-snap.2813-T1 Valid prediction for Augustus_model.g5291.t1 Couldn't classify 88164, 88309 Couldn't classify 98537, 98646 Sorry, prediction pasa_asmbl_40504.p1 fails validation. (GGG) TT 88164-88309 GT AGG (GTG) AG 88459-88603 GT AGG (GTG) AG 89019-89228 GT AGG (GCC) AG 89994-90049 GT AGG (GCC) AG 90164-90279 GT AGG (ATG) AG 90486-90583 GT AGG (GTC) AG 91649-91765 GT AGG (ATC) AG 92509-92649 GT ACG (GAG) AG 95170-95394 GT AGG (GTG) AG 96260-96392 GT GGG (AGC) AG 96619-96744 GT AGG (GTG) AG 98537-98646 GC TCG add_exon() Sorry, pasa_asmbl_40504.p1 90486-90583-initial-1 is invalid. -recovered pasa_asmbl_40504.p1, initial, 90486, 90583 add_exon() Sorry, pasa_asmbl_40504.p1 90164-90279-terminal-2 is invalid. -recovered pasa_asmbl_40504.p1, terminal, 90164, 90279 -recovered pasa_asmbl_40504.p1, internal, 88459, 88603 -recovered pasa_asmbl_40504.p1, internal, 89019, 89228 -recovered pasa_asmbl_40504.p1, internal, 89994, 90049 -recovered pasa_asmbl_40504.p1, internal, 90164, 90279 -recovered pasa_asmbl_40504.p1, internal, 90486, 90583 -recovered pasa_asmbl_40504.p1, internal, 91649, 91765 -recovered pasa_asmbl_40504.p1, internal, 92509, 92649 -recovered pasa_asmbl_40504.p1, internal, 95170, 95394 -recovered pasa_asmbl_40504.p1, internal, 96260, 96392 -recovered pasa_asmbl_40504.p1, internal, 96619, 96744 -recovered pasa_asmbl_40504.p1, internal, 98537, 98646 Valid prediction for snap_scaffold_3-snap.2798-T1 Couldn't classify 98737, 98755 Couldn't classify 100535, 101382 Sorry, prediction pasa_asmbl_40506.p1 fails validation. (CCG) AA 98737-98755 GT GAG (GCG) AG 100535-101382 AG CTA Valid prediction for snap_scaffold_3-snap.2801-T1 Valid prediction for snap_scaffold_3-snap.2803-T1 Valid prediction for GeneMark_model.12952_t Couldn't classify 84340, 84546 Couldn't classify 85252, 85459 Sorry, prediction pasa_asmbl_40502.p1 fails validation. (GTG) AG 84340-84546 GT ACG (GCA) AG 84694-84831 GT AGG (GAG) AG 84935-85113 GT AGG (GAG) AG 85252-85459 GA GGG add_exon() Sorry, pasa_asmbl_40502.p1 84935-85113-terminal-2 is invalid. -recovered pasa_asmbl_40502.p1, terminal, 84935, 85113 -recovered pasa_asmbl_40502.p1, internal, 84340, 84546 -recovered pasa_asmbl_40502.p1, internal, 84694, 84831 -recovered pasa_asmbl_40502.p1, internal, 84935, 85113 Valid prediction for GlimmerHMM_glimmerT_7959-T1 Valid prediction for GeneMark_model.12917_t Valid prediction for snap_scaffold_3-snap.2810-T1 Valid prediction for GeneMark_model.12947_t Couldn't classify 54290, 54499 Sorry, prediction pasa_asmbl_40497.p1 fails validation. (ATG) CG 48451-48713 GT AGG (GGG) AG 51300-51375 GT AGG (ACT) AG 54290-54499 CC TGC -recovered pasa_asmbl_40497.p1, initial, 48451, 48713 -recovered pasa_asmbl_40497.p1, internal, 51300, 51375 Valid prediction for GeneMark_model.12936_t Valid prediction for snap_scaffold_3-snap.2824-T1 Valid prediction for snap_scaffold_3-snap.2815-T1 Valid prediction for snap_scaffold_3-snap.2802-T1 Valid prediction for GeneMark_model.12923_t Valid prediction for snap_scaffold_3-snap.2823-T1 Valid prediction for snap_scaffold_3-snap.2799-T1 Valid prediction for GlimmerHMM_glimmerT_7951-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_3-snap.2797-T1 Valid prediction for CodingQuarry_transcript_46273-T1 Valid prediction for Augustus_model.g5282.t1 Valid prediction for GeneMark_model.12943_t Valid prediction for snap_scaffold_3-snap.2794-T1 Valid prediction for GeneMark_model.12935_t Valid prediction for HiQ_model.g5279.t1 Valid prediction for snap_scaffold_3-snap.2790-T1 Valid prediction for CodingQuarry_transcript_46264-T1 Valid prediction for Augustus_model.g5289.t1 Valid prediction for Augustus_model.g5285.t1 Valid prediction for CodingQuarry_transcript_46267-T1 Valid prediction for GeneMark_model.12938_t Valid prediction for snap_scaffold_3-snap.2809-T1 Valid prediction for CodingQuarry_transcript_46262-T1 Valid prediction for pasa_asmbl_39352.p1 Valid prediction for Augustus_model.g5286.t1 Valid prediction for GeneMark_model.12945_t Valid prediction for GlimmerHMM_glimmerT_7941-T1 Valid prediction for GeneMark_model.12940_t Valid prediction for Augustus_model.g5283.t1 Valid prediction for GlimmerHMM_glimmerT_7952-T1 Valid prediction for pasa_asmbl_39358.p1 Valid prediction for GeneMark_model.12948_t Valid prediction for GeneMark_model.12937_t Valid prediction for HiQ_model.g5280.t1 Valid prediction for GeneMark_model.12942_t Valid prediction for snap_scaffold_3-snap.2814-T1 Valid prediction for GeneMark_model.12916_t Valid prediction for GlimmerHMM_glimmerT_7956-T1 Couldn't classify 236455, 236504 Sorry, prediction pasa_asmbl_39357.p1 fails validation. (ACC) CC 236455-236504 GT GGG (TGT) AG 236589-236642 GT AGG (CTA) AG 236783-236857 GT AGG (TTC) AG 237315-237452 GT AGG (GAC) AG 237862-237970 GT AGG (TGT) AG 238095-238197 GT AGG (AGA) AG 238311-238327 TC GAT -recovered pasa_asmbl_39357.p1, terminal, 238311, 238327 -recovered pasa_asmbl_39357.p1, internal, 236589, 236642 -recovered pasa_asmbl_39357.p1, internal, 236783, 236857 -recovered pasa_asmbl_39357.p1, internal, 237315, 237452 -recovered pasa_asmbl_39357.p1, internal, 237862, 237970 -recovered pasa_asmbl_39357.p1, internal, 238095, 238197 Valid prediction for snap_scaffold_3-snap.2821-T1 Valid prediction for GeneMark_model.12930_t Valid prediction for snap_scaffold_3-snap.2818-T1 Valid prediction for snap_scaffold_3-snap.2805-T1 Valid prediction for GeneMark_model.12927_t Valid prediction for GeneMark_model.12918_t Valid prediction for snap_scaffold_3-snap.2817-T1 Valid prediction for CodingQuarry_transcript_46270-T1 Valid prediction for GeneMark_model.12915_t Valid prediction for GeneMark_model.12924_t Couldn't classify 81475, 81567 Sorry, prediction pasa_asmbl_39365.p1 fails validation. (GCA) TA 81475-81567 GT ATG (GAC) AG 82436-82578 GT AGG (AGA) AG 83348-83972 GT CCG (ATG) AG 84730-85056 GT AGG (GAG) AG 85541-85655 GT AGG (GAA) AG 86170-86331 GT CCG (ACT) AG 87644-87825 GT TTG (GAT) AG 87992-88055 GT AGG (AGT) AG 88382-88438 GT AGG (GAG) AG 89683-89708 GT ATG (CTG) AG 90136-90243 GT AGG (GAG) AG 90751-90843 GT AGG (GCA) AG 91505-91878 GT AGG (GGT) AG 92539-92594 GT AGG (TGA) AG 93405-93603 GT AGG (AGG) AG 94985-95308 GT AGG (GTC) AG 95674-95782 GT AGG (TGT) AG 96409-96511 GT AAG (CTG) AG 96620-96642 TC GAT -recovered pasa_asmbl_39365.p1, initial, 84730, 85056 -recovered pasa_asmbl_39365.p1, terminal, 96620, 96642 -recovered pasa_asmbl_39365.p1, internal, 82436, 82578 -recovered pasa_asmbl_39365.p1, internal, 83348, 83972 -recovered pasa_asmbl_39365.p1, internal, 84730, 85056 -recovered pasa_asmbl_39365.p1, internal, 85541, 85655 -recovered pasa_asmbl_39365.p1, internal, 86170, 86331 -recovered pasa_asmbl_39365.p1, internal, 87644, 87825 -recovered pasa_asmbl_39365.p1, internal, 87992, 88055 -recovered pasa_asmbl_39365.p1, internal, 88382, 88438 -recovered pasa_asmbl_39365.p1, internal, 89683, 89708 -recovered pasa_asmbl_39365.p1, internal, 90136, 90243 -recovered pasa_asmbl_39365.p1, internal, 90751, 90843 -recovered pasa_asmbl_39365.p1, internal, 91505, 91878 -recovered pasa_asmbl_39365.p1, internal, 92539, 92594 -recovered pasa_asmbl_39365.p1, internal, 93405, 93603 -recovered pasa_asmbl_39365.p1, internal, 94985, 95308 -recovered pasa_asmbl_39365.p1, internal, 95674, 95782 -recovered pasa_asmbl_39365.p1, internal, 96409, 96511 Valid prediction for GlimmerHMM_glimmerT_7957-T1 Valid prediction for snap_scaffold_3-snap.2787-T1 Valid prediction for snap_scaffold_3-snap.2788-T1 Valid prediction for snap_scaffold_3-snap.2820-T1 Valid prediction for HiQ_model.g5288.t1 Valid prediction for pasa_asmbl_39360.p1 Valid prediction for GeneMark_model.12920_t Valid prediction for Augustus_model.g5278.t1 Valid prediction for Augustus_model.g5275.t1 Valid prediction for GlimmerHMM_glimmerT_7954-T1 Valid prediction for snap_scaffold_3-snap.2826-T1 Valid prediction for GlimmerHMM_glimmerT_7949-T1 Valid prediction for GlimmerHMM_glimmerT_7947-T1 Valid prediction for Augustus_model.g5273.t1 Valid prediction for snap_scaffold_3-snap.2793-T1 Valid prediction for GeneMark_model.12950_t Valid prediction for GeneMark_model.12914_t Valid prediction for GeneMark_model.12934_t Valid prediction for snap_scaffold_3-snap.2785-T1 Valid prediction for HiQ_model.g5272.t1 Valid prediction for GlimmerHMM_glimmerT_7950-T1 Valid prediction for snap_scaffold_3-snap.2789-T1 Valid prediction for snap_scaffold_3-snap.2791-T1 Valid prediction for GeneMark_model.12919_t Valid prediction for GlimmerHMM_glimmerT_7943-T1 Valid prediction for snap_scaffold_3-snap.2819-T1 Valid prediction for pasa_asmbl_39378.p1 Valid prediction for GeneMark_model.12913_t Valid prediction for snap_scaffold_3-snap.2811-T1 Valid prediction for pasa_asmbl_39356.p1 Valid prediction for Augustus_model.g5274.t1 Couldn't classify 72313, 72426 Sorry, prediction pasa_asmbl_39371.p1 fails validation. (GTG) AG 72313-72426 GT AGG (GCA) AG 73559-73772 GT GGG (GTT) AG 74728-74977 GT AGG (TGA) AG 75521-75856 GT AGG (CAG) AG 76348-76662 GT AGG (CAC) AG 77193-77336 GT AGG (TCC) AG 77797-78592 AA AGA -recovered pasa_asmbl_39371.p1, terminal, 77797, 78592 -recovered pasa_asmbl_39371.p1, internal, 72313, 72426 -recovered pasa_asmbl_39371.p1, internal, 73559, 73772 -recovered pasa_asmbl_39371.p1, internal, 74728, 74977 -recovered pasa_asmbl_39371.p1, internal, 75521, 75856 -recovered pasa_asmbl_39371.p1, internal, 76348, 76662 -recovered pasa_asmbl_39371.p1, internal, 77193, 77336 Valid prediction for GlimmerHMM_glimmerT_7955-T1 Valid prediction for snap_scaffold_3-snap.2807-T1 Valid prediction for Augustus_model.g5271.t1 Valid prediction for snap_scaffold_3-snap.2804-T1 Valid prediction for pasa_asmbl_39363.p1 Valid prediction for snap_scaffold_3-snap.2825-T1 Valid prediction for CodingQuarry_transcript_46263-T1 Valid prediction for GeneMark_model.12929_t Valid prediction for CodingQuarry_transcript_46266-T1 Valid prediction for snap_scaffold_3-snap.2786-T1 Valid prediction for GeneMark_model.12932_t Valid prediction for GlimmerHMM_glimmerT_7940-T1 Valid prediction for Augustus_model.g5287.t1 Valid prediction for GlimmerHMM_glimmerT_7942-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 33491, rend_intergenic: 31124 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71619, rend_intergenic: 63456 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196460, rend_intergenic: 183835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213566, rend_intergenic: 211732 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 265821, rend_intergenic: 254209 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 276163 -exon list size: 662 building trellis 0.2 0.3 0.5 0.6 0.8 0.9 1.1 1.2 1.4 1.5 1.7 1.8 2.0 2.1 2.3 2.4 2.6 2.7 2.9 3.0 3.2 3.3 3.5 3.6 3.8 3.9 4.1 4.2 4.4 4.5 4.7 4.8 5.0 5.1 5.3 5.4 5.6 5.7 5.9 6.0 6.2 6.3 6.5 6.6 6.8 6.9 7.1 7.2 7.4 7.5 7.7 7.8 8.0 8.1 8.3 8.4 8.6 8.7 8.9 9.0 9.2 9.3 9.5 9.6 9.8 9.9 10.1 10.2 10.4 10.5 10.7 10.8 11.0 11.1 11.3 11.4 11.6 11.7 11.9 12.0 12.2 12.3 12.5 12.7 12.8 13.0 13.1 13.3 13.4 13.6 13.7 13.9 14.0 14.2 14.3 14.5 14.6 14.8 14.9 15.1 15.2 15.4 15.5 15.7 15.8 16.0 16.1 16.3 16.4 16.6 16.7 16.9 17.0 17.2 17.3 17.5 17.6 17.8 17.9 18.1 18.2 18.4 18.5 18.7 18.8 19.0 19.1 19.3 19.4 19.6 19.7 19.9 20.0 20.2 20.3 20.5 20.6 20.8 20.9 21.1 21.2 21.4 21.5 21.7 21.8 22.0 22.1 22.3 22.4 22.6 22.7 22.9 23.0 23.2 23.3 23.5 23.6 23.8 23.9 24.1 24.2 24.4 24.5 24.7 24.8 25.0 25.2 25.3 25.5 25.6 25.8 25.9 26.1 26.2 26.4 26.5 26.7 26.8 27.0 27.1 27.3 27.4 27.6 27.7 27.9 28.0 28.2 28.3 28.5 28.6 28.8 28.9 29.1 29.2 29.4 29.5 29.7 29.8 30.0 30.1 30.3 30.4 30.6 30.7 30.9 31.0 31.2 31.3 31.5 31.6 31.8 31.9 32.1 32.2 32.4 32.5 32.7 32.8 33.0 33.1 33.3 33.4 33.6 33.7 33.9 34.0 34.2 34.3 34.5 34.6 34.8 34.9 35.1 35.2 35.4 35.5 35.7 35.8 36.0 36.1 36.3 36.4 36.6 36.7 36.9 37.0 37.2 37.3 37.5 37.7 37.8 38.0 38.1 38.3 38.4 38.6 38.7 38.9 39.0 39.2 39.3 39.5 39.6 39.8 39.9 40.1 40.2 40.4 40.5 40.7 40.8 41.0 41.1 41.3 41.4 41.6 41.7 41.9 42.0 42.2 42.3 42.5 42.6 42.8 42.9 43.1 43.2 43.4 43.5 43.7 43.8 44.0 44.1 44.3 44.4 44.6 44.7 44.9 45.0 45.2 45.3 45.5 45.6 45.8 45.9 46.1 46.2 46.4 46.5 46.7 46.8 47.0 47.1 47.3 47.4 47.6 47.7 47.9 48.0 48.2 48.3 48.5 48.6 48.8 48.9 49.1 49.2 49.4 49.5 49.7 49.8 50.0 50.2 50.3 50.5 50.6 50.8 50.9 51.1 51.2 51.4 51.5 51.7 51.8 52.0 52.1 52.3 52.4 52.6 52.7 52.9 53.0 53.2 53.3 53.5 53.6 53.8 53.9 54.1 54.2 54.4 54.5 54.7 54.8 55.0 55.1 55.3 55.4 55.6 55.7 55.9 56.0 56.2 56.3 56.5 56.6 56.8 56.9 57.1 57.2 57.4 57.5 57.7 57.8 58.0 58.1 58.3 58.4 58.6 58.7 58.9 59.0 59.2 59.3 59.5 59.6 59.8 59.9 60.1 60.2 60.4 60.5 60.7 60.8 61.0 61.1 61.3 61.4 61.6 61.7 61.9 62.0 62.2 62.3 62.5 62.7 62.8 63.0 63.1 63.3 63.4 63.6 63.7 63.9 64.0 64.2 64.3 64.5 64.6 64.8 64.9 65.1 65.2 65.4 65.5 65.7 65.8 66.0 66.1 66.3 66.4 66.6 66.7 66.9 67.0 67.2 67.3 67.5 67.6 67.8 67.9 68.1 68.2 68.4 68.5 68.7 68.8 69.0 69.1 69.3 69.4 69.6 69.7 69.9 70.0 70.2 70.3 70.5 70.6 70.8 70.9 71.1 71.2 71.4 71.5 71.7 71.8 72.0 72.1 72.3 72.4 72.6 72.7 72.9 73.0 73.2 73.3 73.5 73.6 73.8 73.9 74.1 74.2 74.4 74.5 74.7 74.8 75.0 75.2 75.3 75.5 75.6 75.8 75.9 76.1 76.2 76.4 76.5 76.7 76.8 77.0 77.1 77.3 77.4 77.6 77.7 77.9 78.0 78.2 78.3 78.5 78.6 78.8 78.9 79.1 79.2 79.4 79.5 79.7 79.8 80.0 80.1 80.3 80.4 80.6 80.7 80.9 81.0 81.2 81.3 81.5 81.6 81.8 81.9 82.1 82.2 82.4 82.5 82.7 82.8 83.0 83.1 83.3 83.4 83.6 83.7 83.9 84.0 84.2 84.3 84.5 84.6 84.8 84.9 85.1 85.2 85.4 85.5 85.7 85.8 86.0 86.1 86.3 86.4 86.6 86.7 86.9 87.0 87.2 87.3 87.5 87.7 87.8 88.0 88.1 88.3 88.4 88.6 88.7 88.9 89.0 89.2 89.3 89.5 89.6 89.8 89.9 90.1 90.2 90.4 90.5 90.7 90.8 91.0 91.1 91.3 91.4 91.6 91.7 91.9 92.0 92.2 92.3 92.5 92.6 92.8 92.9 93.1 93.2 93.4 93.5 93.7 93.8 94.0 94.1 94.3 94.4 94.6 94.7 94.9 95.0 95.2 95.3 95.5 95.6 95.8 95.9 96.1 96.2 96.4 96.5 96.7 96.8 97.0 97.1 97.3 97.4 97.6 97.7 97.9 98.0 98.2 98.3 98.5 98.6 98.8 98.9 99.1 99.2 99.4 99.5 99.7 99.8 -found 28 predictions from path traversal Error with prediction: snap lend_intergenic: 33491, rend_intergenic: 31124 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71619, rend_intergenic: 63456 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196460, rend_intergenic: 183835 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 213566, rend_intergenic: 211732 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 265821, rend_intergenic: 254209 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 26 predictions persist after filtering for low support