-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_3/scaffold_3_11554804-11837918 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_3-snap.2326-T1 Couldn't classify 76974, 77155 Couldn't classify 77593, 77718 Sorry, prediction pasa_asmbl_40317.p1 fails validation. (TGT) CC 76974-77155 GT AGG (GGC) AG 77236-77476 GT CGG (TTG) AG 77593-77718 GT AGG -recovered pasa_asmbl_40317.p1, internal, 77236, 77476 -recovered pasa_asmbl_40317.p1, internal, 77593, 77718 Valid prediction for snap_scaffold_3-snap.2343-T1 Valid prediction for GeneMark_model.12491_t Valid prediction for GeneMark_model.12511_t Valid prediction for Augustus_model.g4949.t1 Valid prediction for GlimmerHMM_glimmerT_7538-T1 Valid prediction for snap_scaffold_3-snap.2319-T1 Valid prediction for GeneMark_model.12519_t Valid prediction for Augustus_model.g4946.t1 Couldn't classify 256969, 257040 Sorry, prediction GeneMark_model.12516_t fails validation. (ATG) GA 256674-256734 GT CGG (GGC) AG 256871-256910 GT GGG (AGG) AG 256969-257040 GT GTG -recovered GeneMark_model.12516_t, initial, 256674, 256734 -recovered GeneMark_model.12516_t, internal, 256871, 256910 -recovered GeneMark_model.12516_t, internal, 256969, 257040 Valid prediction for GeneMark_model.12493_t Valid prediction for GeneMark_model.12517_t Valid prediction for GlimmerHMM_glimmerT_7556-T1 Valid prediction for GeneMark_model.12484_t Couldn't classify 88658, 88759 Sorry, prediction pasa_asmbl_40322.p1 fails validation. (ATT) CC 88658-88759 GT AGG (AGC) AG 89626-89838 GT AGG (TGT) AG 90249-90359 GT CTG (GTG) AG 91113-91181 GT AGG (CAG) AG 91949-92398 CA GAC -recovered pasa_asmbl_40322.p1, terminal, 91949, 92398 -recovered pasa_asmbl_40322.p1, internal, 89626, 89838 -recovered pasa_asmbl_40322.p1, internal, 90249, 90359 -recovered pasa_asmbl_40322.p1, internal, 91113, 91181 Valid prediction for GeneMark_model.12488_t Valid prediction for CodingQuarry_transcript_46184-T1 Valid prediction for Augustus_model.g4958.t1 Valid prediction for GlimmerHMM_glimmerT_7531-T1 Valid prediction for GlimmerHMM_glimmerT_7542-T1 Valid prediction for GeneMark_model.12503_t Valid prediction for GeneMark_model.12478_t Valid prediction for GeneMark_model.12505_t Valid prediction for snap_scaffold_3-snap.2333-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for CodingQuarry_transcript_46182-T1 Valid prediction for snap_scaffold_3-snap.2324-T1 Valid prediction for snap_scaffold_3-snap.2311-T1 Valid prediction for snap_scaffold_3-snap.2328-T1 Valid prediction for snap_scaffold_3-snap.2314-T1 Valid prediction for snap_scaffold_3-snap.2335-T1 Valid prediction for GlimmerHMM_glimmerT_7552-T1 Valid prediction for pasa_asmbl_40325.p1 Valid prediction for snap_scaffold_3-snap.2310-T1 Valid prediction for snap_scaffold_3-snap.2346-T1 Valid prediction for snap_scaffold_3-snap.2336-T1 Valid prediction for CodingQuarry_transcript_46183-T1 Valid prediction for GeneMark_model.12500_t Valid prediction for GeneMark_model.12486_t Valid prediction for GlimmerHMM_glimmerT_7533-T1 Valid prediction for GlimmerHMM_glimmerT_7549-T1 Couldn't classify 73597, 73729 Couldn't classify 75025, 75214 Sorry, prediction pasa_asmbl_40316.p1 fails validation. (CAG) GT 73597-73729 GT AGG (CGG) AG 74017-74107 GT AGG (GTT) AG 74810-74923 GT TGG (GTA) AG 75025-75214 GA TGG -recovered pasa_asmbl_40316.p1, internal, 74017, 74107 -recovered pasa_asmbl_40316.p1, internal, 74810, 74923 Couldn't classify 79389, 79478 Couldn't classify 87846, 87935 Sorry, prediction pasa_asmbl_40318.p1 fails validation. (CAG) TG 79389-79478 GT AGG (AAC) AG 79573-79710 GT AGG (ACC) AG 79879-80045 GT AAG (GTC) AG 80146-80254 GT GGG (AGC) AG 80357-80503 GT GGG (GAC) AG 80618-80764 GT AGG (GAG) AG 80894-81101 GT AGG (GCT) AG 81539-81759 GT AGG (ACC) AG 81862-82052 GT AGG (GTT) AG 82145-82318 GT AGG (GTA) AG 82747-82888 GT AGG (GTG) AG 83075-83819 GT TGG (GCC) AG 84229-84352 GT TGG (GTA) AG 84450-84675 GT AGG (GTG) AG 86431-86560 GT GGG (GCC) AG 86678-86863 GT CGG (GTA) AG 87330-87550 GT AGG (GTG) AG 87846-87935 TC GGT -recovered pasa_asmbl_40318.p1, internal, 79573, 79710 -recovered pasa_asmbl_40318.p1, internal, 79879, 80045 -recovered pasa_asmbl_40318.p1, internal, 80146, 80254 -recovered pasa_asmbl_40318.p1, internal, 80357, 80503 -recovered pasa_asmbl_40318.p1, internal, 80618, 80764 -recovered pasa_asmbl_40318.p1, internal, 80894, 81101 -recovered pasa_asmbl_40318.p1, internal, 81539, 81759 -recovered pasa_asmbl_40318.p1, internal, 81862, 82052 -recovered pasa_asmbl_40318.p1, internal, 82145, 82318 -recovered pasa_asmbl_40318.p1, internal, 82747, 82888 -recovered pasa_asmbl_40318.p1, internal, 83075, 83819 -recovered pasa_asmbl_40318.p1, internal, 84229, 84352 -recovered pasa_asmbl_40318.p1, internal, 84450, 84675 -recovered pasa_asmbl_40318.p1, internal, 86431, 86560 -recovered pasa_asmbl_40318.p1, internal, 86678, 86863 -recovered pasa_asmbl_40318.p1, internal, 87330, 87550 Valid prediction for GeneMark_model.12476_t Couldn't classify 70514, 70563 Couldn't classify 71138, 71195 Sorry, prediction pasa_asmbl_40748.p1 fails validation. (TTC) GC 70514-70563 GT AAG (GCC) AG 70734-70985 GT AGG (GTT) AG 71138-71195 GT AGG add_exon() Sorry, pasa_asmbl_40748.p1 70734-70985-terminal-1 is invalid. -recovered pasa_asmbl_40748.p1, terminal, 70734, 70985 -recovered pasa_asmbl_40748.p1, internal, 70734, 70985 -recovered pasa_asmbl_40748.p1, internal, 71138, 71195 Valid prediction for snap_scaffold_3-snap.2348-T1 Valid prediction for snap_scaffold_3-snap.2313-T1 Valid prediction for GeneMark_model.12518_t Valid prediction for HiQ_model.g4948.t1 Valid prediction for GeneMark_model.12481_t Valid prediction for snap_scaffold_3-snap.2325-T1 Valid prediction for CodingQuarry_transcript_46181-T1 Valid prediction for CodingQuarry_transcript_46180-T1 Valid prediction for snap_scaffold_3-snap.2320-T1 Valid prediction for GlimmerHMM_glimmerT_7541-T1 Valid prediction for GeneMark_model.12513_t Valid prediction for GeneMark_model.12509_t Valid prediction for GeneMark_model.12498_t Valid prediction for GeneMark_model.12494_t Valid prediction for GlimmerHMM_glimmerT_7539-T1 Valid prediction for GeneMark_model.12482_t Valid prediction for snap_scaffold_3-snap.2344-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_7543-T1 Valid prediction for snap_scaffold_3-snap.2315-T1 Couldn't classify 222036, 222131 Couldn't classify 223317, 223390 Sorry, prediction pasa_asmbl_39131.p1 fails validation. (GCC) AT 222036-222131 GT GGG (GAT) AG 222266-222395 GT AGG (CTA) AG 222577-222705 GT AGG (ATG) AG 222956-223063 GT GCG (ACT) AG 223317-223390 GA GTG add_exon() Sorry, pasa_asmbl_39131.p1 222956-223063-initial-1 is invalid. -recovered pasa_asmbl_39131.p1, initial, 222956, 223063 add_exon() Sorry, pasa_asmbl_39131.p1 222266-222395-terminal-3 is invalid. -recovered pasa_asmbl_39131.p1, terminal, 222266, 222395 -recovered pasa_asmbl_39131.p1, internal, 222266, 222395 -recovered pasa_asmbl_39131.p1, internal, 222577, 222705 -recovered pasa_asmbl_39131.p1, internal, 222956, 223063 Valid prediction for GeneMark_model.12490_t Valid prediction for Augustus_model.g4945.t1 Valid prediction for GeneMark_model.12502_t Valid prediction for GlimmerHMM_glimmerT_7534-T1 Valid prediction for GeneMark_model.12479_t Valid prediction for GeneMark_model.12489_t Valid prediction for GlimmerHMM_glimmerT_7554-T1 Valid prediction for snap_scaffold_3-snap.2332-T1 Valid prediction for GeneMark_model.12485_t Couldn't classify 68539, 68548 Sorry, prediction pasa_asmbl_39138.p1 fails validation. (CAC) TC 68539-68548 GT GTG (CCC) AG 69011-69156 GT AGG (CTG) AG 69322-69528 GT AGG (AAC) AG 69711-69859 GT AGG (ACA) AG 70023-70152 GT AGG (TCA) AG 70398-70607 GT TGG (TCT) AG 71139-71222 GT CTG (CCC) AG 71433-71581 GT AGG (GGT) AG 71934-72259 GT AGG (TTG) AG 72492-72616 GT AGG (ACT) AG 72724-72865 GT AGG (GAC) AG 73100-73358 GT AGG (GGA) AG 73709-73781 CC AAC -recovered pasa_asmbl_39138.p1, terminal, 73709, 73781 -recovered pasa_asmbl_39138.p1, internal, 69011, 69156 -recovered pasa_asmbl_39138.p1, internal, 69322, 69528 -recovered pasa_asmbl_39138.p1, internal, 69711, 69859 -recovered pasa_asmbl_39138.p1, internal, 70023, 70152 -recovered pasa_asmbl_39138.p1, internal, 70398, 70607 -recovered pasa_asmbl_39138.p1, internal, 71139, 71222 -recovered pasa_asmbl_39138.p1, internal, 71433, 71581 -recovered pasa_asmbl_39138.p1, internal, 71934, 72259 -recovered pasa_asmbl_39138.p1, internal, 72492, 72616 -recovered pasa_asmbl_39138.p1, internal, 72724, 72865 -recovered pasa_asmbl_39138.p1, internal, 73100, 73358 Couldn't classify 224771, 224778 Couldn't classify 226082, 226138 Sorry, prediction pasa_asmbl_39130.p1 fails validation. (CAG) AG 224771-224778 GT AAG (GTT) AG 225224-225383 GT TCG (GTT) AG 225667-225861 GT AGG (CTG) AG 226082-226138 TG TGT -recovered pasa_asmbl_39130.p1, internal, 224771, 224778 -recovered pasa_asmbl_39130.p1, internal, 225224, 225383 -recovered pasa_asmbl_39130.p1, internal, 225667, 225861 Valid prediction for Augustus_model.g4943.t1 Couldn't classify 26727, 26944 Couldn't classify 28097, 28205 Sorry, prediction pasa_asmbl_39675.p1 fails validation. (GGC) TA 26727-26944 GT AGG (TGC) AG 28097-28205 AG AAA Valid prediction for HiQ_model.g4947.t1 Valid prediction for GeneMark_model.12504_t Valid prediction for GeneMark_model.12483_t Valid prediction for Augustus_model.g4951.t1 Valid prediction for Augustus_model.g4950.t1 Valid prediction for GeneMark_model.12510_t Valid prediction for Augustus_model.g4956.t1 Valid prediction for GeneMark_model.12477_t Valid prediction for GlimmerHMM_glimmerT_7547-T1 Couldn't classify 39614, 39760 Couldn't classify 41584, 41626 Sorry, prediction pasa_asmbl_39148.p1 fails validation. (CAG) TC 39614-39760 GT AGG (GAC) AG 40331-40474 GT AGG (GGC) AG 40892-41037 GT AGG (GGA) AG 41584-41626 GC CGG -recovered pasa_asmbl_39148.p1, internal, 40331, 40474 -recovered pasa_asmbl_39148.p1, internal, 40892, 41037 -recovered pasa_asmbl_39148.p1, internal, 41584, 41626 Valid prediction for GeneMark_model.12475_t Valid prediction for snap_scaffold_3-snap.2341-T1 Couldn't classify 42260, 42398 Sorry, prediction pasa_asmbl_39147.p1 fails validation. (TGC) GG 42260-42398 GT CGG (GCC) AG 42796-42926 GT CGG (GGT) AG 43541-43735 CT GAC -recovered pasa_asmbl_39147.p1, terminal, 43541, 43735 -recovered pasa_asmbl_39147.p1, internal, 42796, 42926 Valid prediction for GeneMark_model.12499_t Valid prediction for snap_scaffold_3-snap.2340-T1 Valid prediction for HiQ_model.g4952.t1 Valid prediction for GlimmerHMM_glimmerT_7536-T1 Valid prediction for GlimmerHMM_glimmerT_7548-T1 Valid prediction for GeneMark_model.12515_t Valid prediction for snap_scaffold_3-snap.2317-T1 Valid prediction for GeneMark_model.12497_t Valid prediction for GeneMark_model.12506_t Valid prediction for GeneMark_model.12495_t Valid prediction for snap_scaffold_3-snap.2347-T1 Valid prediction for snap_scaffold_3-snap.2330-T1 Valid prediction for snap_scaffold_3-snap.2329-T1 Valid prediction for snap_scaffold_3-snap.2338-T1 Valid prediction for snap_scaffold_3-snap.2323-T1 Valid prediction for GeneMark_model.12507_t Valid prediction for Augustus_model.g4954.t1 Valid prediction for snap_scaffold_3-snap.2322-T1 Valid prediction for snap_scaffold_3-snap.2339-T1 Valid prediction for snap_scaffold_3-snap.2331-T1 Couldn't classify 58613, 59182 Sorry, prediction pasa_asmbl_39143.p1 fails validation. (GCT) AG 58613-59182 GT AGG (GTT) AG 60315-60388 GT AAG (TGG) AG 60504-60579 GT ATG (TTG) AG 63561-63623 CA GAC -recovered pasa_asmbl_39143.p1, terminal, 63561, 63623 -recovered pasa_asmbl_39143.p1, internal, 58613, 59182 -recovered pasa_asmbl_39143.p1, internal, 60315, 60388 -recovered pasa_asmbl_39143.p1, internal, 60504, 60579 Valid prediction for GeneMark_model.12508_t Couldn't classify 220949, 221163 Couldn't classify 221649, 221742 Sorry, prediction pasa_asmbl_39647.p1 fails validation. (TTT) CA 220949-221163 GT CTG (TCT) AG 221495-221521 GT AGG (GAA) AG 221649-221742 GA TGG -recovered pasa_asmbl_39647.p1, internal, 221495, 221521 Valid prediction for snap_scaffold_3-snap.2345-T1 Couldn't classify 226439, 226482 Sorry, prediction pasa_asmbl_39128.p1 fails validation. (CAG) TG 226439-226482 GT AAG (GAT) AG 226585-226745 GT AGG (CCT) AG 226841-226987 GT AGG (AGA) AG 227098-227189 GT CGG (GTT) AG 227464-227616 GT AGG (GTT) AG 227821-228090 GT AGG (ACG) AG 228523-228763 GT AGG (GGG) AG 229650-229829 GT CAG (GCT) AG 229926-230164 GT ACG (CTG) AG 230642-230821 GT GGG (GTG) AG 230958-231065 GT TGG (TTC) AG 231190-231315 GT TTG (CTC) AG 231632-231821 GT GGG (GTG) AG 233101-233174 CA AGC -recovered pasa_asmbl_39128.p1, terminal, 233101, 233174 -recovered pasa_asmbl_39128.p1, internal, 226585, 226745 -recovered pasa_asmbl_39128.p1, internal, 226841, 226987 -recovered pasa_asmbl_39128.p1, internal, 227098, 227189 -recovered pasa_asmbl_39128.p1, internal, 227464, 227616 -recovered pasa_asmbl_39128.p1, internal, 227821, 228090 -recovered pasa_asmbl_39128.p1, internal, 228523, 228763 -recovered pasa_asmbl_39128.p1, internal, 229650, 229829 -recovered pasa_asmbl_39128.p1, internal, 229926, 230164 -recovered pasa_asmbl_39128.p1, internal, 230642, 230821 -recovered pasa_asmbl_39128.p1, internal, 230958, 231065 -recovered pasa_asmbl_39128.p1, internal, 231190, 231315 -recovered pasa_asmbl_39128.p1, internal, 231632, 231821 Valid prediction for snap_scaffold_3-snap.2342-T1 Valid prediction for GlimmerHMM_glimmerT_7553-T1 Valid prediction for GlimmerHMM_glimmerT_7550-T1 Valid prediction for pasa_asmbl_39132.p1 Valid prediction for GeneMark_model.12512_t Valid prediction for Augustus_model.g4944.t1 Valid prediction for snap_scaffold_3-snap.2312-T1 Valid prediction for GeneMark_model.12514_t Valid prediction for HiQ_model.g4955.t1 Valid prediction for GlimmerHMM_glimmerT_7555-T1 Valid prediction for snap_scaffold_3-snap.2318-T1 Valid prediction for GlimmerHMM_glimmerT_7546-T1 Valid prediction for snap_scaffold_3-snap.2337-T1 Valid prediction for Augustus_model.g4953.t1 Valid prediction for GeneMark_model.12480_t Valid prediction for Augustus_model.g4957.t1 Valid prediction for snap_scaffold_3-snap.2321-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_7535-T1 Valid prediction for snap_scaffold_3-snap.2327-T1 Valid prediction for GlimmerHMM_glimmerT_7544-T1 Valid prediction for GeneMark_model.12492_t Couldn't classify 68389, 68547 Sorry, prediction pasa_asmbl_39140.p2 fails validation. (ATG) CA 67376-67528 GT CGG (GAG) AG 68389-68547 TG AGT -recovered pasa_asmbl_39140.p2, initial, 67376, 67528 Valid prediction for snap_scaffold_3-snap.2316-T1 Valid prediction for snap_scaffold_3-snap.2334-T1 Couldn't classify 141692, 141766 Couldn't classify 142970, 142984 Sorry, prediction pasa_asmbl_39136.p1 fails validation. (AGT) GC 141692-141766 GT AGG (CCT) AG 142165-142267 GT AGG (GTC) AG 142628-142803 GT AGG (ATG) AG 142970-142984 TG AGT -recovered pasa_asmbl_39136.p1, internal, 142165, 142267 -recovered pasa_asmbl_39136.p1, internal, 142628, 142803 Valid prediction for GlimmerHMM_glimmerT_7532-T1 Valid prediction for GlimmerHMM_glimmerT_7537-T1 Couldn't classify 143208, 143294 Sorry, prediction pasa_asmbl_39134.p1 fails validation. (GAG) CT 143208-143294 GT AGG (GGT) AG 144440-144539 GT AGG (GGG) AG 145220-145341 GT ACG (CTG) AG 147661-147738 GT AGG (GTA) AG 149598-149678 GT TGG (GCC) AG 150403-150573 GT TGG (GGT) AG 150826-150904 GT AGG (GAA) AG 151208-151293 GT TGG (AAG) AG 151468-151536 GT AGG (AGG) AG 152349-152411 GT TGG (GAC) AG 152833-152868 GT AGG (ATC) AG 153374-153570 GT TGG (GCG) AG 153745-153854 GT AGG (TAT) AG 155007-155087 GT AGG (GAG) AG 155195-155275 GT ACG (ACA) AG 155497-155699 GC AGG (GCC) AG 155850-155933 GT AGG (GAT) AG 158013-158189 GA AGG add_exon() Sorry, pasa_asmbl_39134.p1 155007-155087-terminal-1 is invalid. -recovered pasa_asmbl_39134.p1, terminal, 155007, 155087 -recovered pasa_asmbl_39134.p1, terminal, 158013, 158189 -recovered pasa_asmbl_39134.p1, internal, 144440, 144539 -recovered pasa_asmbl_39134.p1, internal, 145220, 145341 -recovered pasa_asmbl_39134.p1, internal, 147661, 147738 -recovered pasa_asmbl_39134.p1, internal, 149598, 149678 -recovered pasa_asmbl_39134.p1, internal, 150403, 150573 -recovered pasa_asmbl_39134.p1, internal, 150826, 150904 -recovered pasa_asmbl_39134.p1, internal, 151208, 151293 -recovered pasa_asmbl_39134.p1, internal, 151468, 151536 -recovered pasa_asmbl_39134.p1, internal, 152349, 152411 -recovered pasa_asmbl_39134.p1, internal, 152833, 152868 -recovered pasa_asmbl_39134.p1, internal, 153374, 153570 -recovered pasa_asmbl_39134.p1, internal, 153745, 153854 -recovered pasa_asmbl_39134.p1, internal, 155007, 155087 -recovered pasa_asmbl_39134.p1, internal, 155195, 155275 -recovered pasa_asmbl_39134.p1, internal, 155497, 155699 -recovered pasa_asmbl_39134.p1, internal, 155850, 155933 Valid prediction for GlimmerHMM_glimmerT_7545-T1 Valid prediction for GlimmerHMM_glimmerT_7540-T1 Valid prediction for GlimmerHMM_glimmerT_7551-T1 Valid prediction for GeneMark_model.12501_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11785, rend_intergenic: 7563 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15894, rend_intergenic: 12643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26629, rend_intergenic: 22231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69557, rend_intergenic: 66738 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92704, rend_intergenic: 76245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133831, rend_intergenic: 126685 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194216, rend_intergenic: 190285 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203065, rend_intergenic: 196254 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252358, rend_intergenic: 245522 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256342, rend_intergenic: 253617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 283115 -exon list size: 721 building trellis 0.1 0.3 0.4 0.6 0.7 0.8 1.0 1.1 1.2 1.4 1.5 1.7 1.8 1.9 2.1 2.2 2.4 2.5 2.6 2.8 2.9 3.0 3.2 3.3 3.5 3.6 3.7 3.9 4.0 4.1 4.3 4.4 4.6 4.7 4.8 5.0 5.1 5.3 5.4 5.5 5.7 5.8 5.9 6.1 6.2 6.4 6.5 6.6 6.8 6.9 7.1 7.2 7.3 7.5 7.6 7.7 7.9 8.0 8.2 8.3 8.4 8.6 8.7 8.9 9.0 9.1 9.3 9.4 9.5 9.7 9.8 10.0 10.1 10.2 10.4 10.5 10.7 10.8 10.9 11.1 11.2 11.3 11.5 11.6 11.8 11.9 12.0 12.2 12.3 12.4 12.6 12.7 12.9 13.0 13.1 13.3 13.4 13.6 13.7 13.8 14.0 14.1 14.2 14.4 14.5 14.7 14.8 14.9 15.1 15.2 15.4 15.5 15.6 15.8 15.9 16.0 16.2 16.3 16.5 16.6 16.7 16.9 17.0 17.2 17.3 17.4 17.6 17.7 17.8 18.0 18.1 18.3 18.4 18.5 18.7 18.8 18.9 19.1 19.2 19.4 19.5 19.6 19.8 19.9 20.1 20.2 20.3 20.5 20.6 20.7 20.9 21.0 21.2 21.3 21.4 21.6 21.7 21.9 22.0 22.1 22.3 22.4 22.5 22.7 22.8 23.0 23.1 23.2 23.4 23.5 23.7 23.8 23.9 24.1 24.2 24.3 24.5 24.6 24.8 24.9 25.0 25.2 25.3 25.4 25.6 25.7 25.9 26.0 26.1 26.3 26.4 26.6 26.7 26.8 27.0 27.1 27.2 27.4 27.5 27.7 27.8 27.9 28.1 28.2 28.4 28.5 28.6 28.8 28.9 29.0 29.2 29.3 29.5 29.6 29.7 29.9 30.0 30.2 30.3 30.4 30.6 30.7 30.8 31.0 31.1 31.3 31.4 31.5 31.7 31.8 32.0 32.1 32.2 32.4 32.5 32.6 32.8 32.9 33.1 33.2 33.3 33.5 33.6 33.7 33.9 34.0 34.2 34.3 34.4 34.6 34.7 34.9 35.0 35.1 35.3 35.4 35.5 35.7 35.8 36.0 36.1 36.2 36.4 36.5 36.7 36.8 36.9 37.1 37.2 37.3 37.5 37.6 37.8 37.9 38.0 38.2 38.3 38.5 38.6 38.7 38.9 39.0 39.1 39.3 39.4 39.6 39.7 39.8 40.0 40.1 40.2 40.4 40.5 40.7 40.8 40.9 41.1 41.2 41.4 41.5 41.6 41.8 41.9 42.0 42.2 42.3 42.5 42.6 42.7 42.9 43.0 43.2 43.3 43.4 43.6 43.7 43.8 44.0 44.1 44.3 44.4 44.5 44.7 44.8 45.0 45.1 45.2 45.4 45.5 45.6 45.8 45.9 46.1 46.2 46.3 46.5 46.6 46.7 46.9 47.0 47.2 47.3 47.4 47.6 47.7 47.9 48.0 48.1 48.3 48.4 48.5 48.7 48.8 49.0 49.1 49.2 49.4 49.5 49.7 49.8 49.9 50.1 50.2 50.3 50.5 50.6 50.8 50.9 51.0 51.2 51.3 51.5 51.6 51.7 51.9 52.0 52.1 52.3 52.4 52.6 52.7 52.8 53.0 53.1 53.3 53.4 53.5 53.7 53.8 53.9 54.1 54.2 54.4 54.5 54.6 54.8 54.9 55.0 55.2 55.3 55.5 55.6 55.7 55.9 56.0 56.2 56.3 56.4 56.6 56.7 56.8 57.0 57.1 57.3 57.4 57.5 57.7 57.8 58.0 58.1 58.2 58.4 58.5 58.6 58.8 58.9 59.1 59.2 59.3 59.5 59.6 59.8 59.9 60.0 60.2 60.3 60.4 60.6 60.7 60.9 61.0 61.1 61.3 61.4 61.5 61.7 61.8 62.0 62.1 62.2 62.4 62.5 62.7 62.8 62.9 63.1 63.2 63.3 63.5 63.6 63.8 63.9 64.0 64.2 64.3 64.5 64.6 64.7 64.9 65.0 65.1 65.3 65.4 65.6 65.7 65.8 66.0 66.1 66.3 66.4 66.5 66.7 66.8 66.9 67.1 67.2 67.4 67.5 67.6 67.8 67.9 68.0 68.2 68.3 68.5 68.6 68.7 68.9 69.0 69.2 69.3 69.4 69.6 69.7 69.8 70.0 70.1 70.3 70.4 70.5 70.7 70.8 71.0 71.1 71.2 71.4 71.5 71.6 71.8 71.9 72.1 72.2 72.3 72.5 72.6 72.8 72.9 73.0 73.2 73.3 73.4 73.6 73.7 73.9 74.0 74.1 74.3 74.4 74.6 74.7 74.8 75.0 75.1 75.2 75.4 75.5 75.7 75.8 75.9 76.1 76.2 76.3 76.5 76.6 76.8 76.9 77.0 77.2 77.3 77.5 77.6 77.7 77.9 78.0 78.1 78.3 78.4 78.6 78.7 78.8 79.0 79.1 79.3 79.4 79.5 79.7 79.8 79.9 80.1 80.2 80.4 80.5 80.6 80.8 80.9 81.1 81.2 81.3 81.5 81.6 81.7 81.9 82.0 82.2 82.3 82.4 82.6 82.7 82.8 83.0 83.1 83.3 83.4 83.5 83.7 83.8 84.0 84.1 84.2 84.4 84.5 84.6 84.8 84.9 85.1 85.2 85.3 85.5 85.6 85.8 85.9 86.0 86.2 86.3 86.4 86.6 86.7 86.9 87.0 87.1 87.3 87.4 87.6 87.7 87.8 88.0 88.1 88.2 88.4 88.5 88.7 88.8 88.9 89.1 89.2 89.3 89.5 89.6 89.8 89.9 90.0 90.2 90.3 90.5 90.6 90.7 90.9 91.0 91.1 91.3 91.4 91.6 91.7 91.8 92.0 92.1 92.3 92.4 92.5 92.7 92.8 92.9 93.1 93.2 93.4 93.5 93.6 93.8 93.9 94.1 94.2 94.3 94.5 94.6 94.7 94.9 95.0 95.2 95.3 95.4 95.6 95.7 95.9 96.0 96.1 96.3 96.4 96.5 96.7 96.8 97.0 97.1 97.2 97.4 97.5 97.6 97.8 97.9 98.1 98.2 98.3 98.5 98.6 98.8 98.9 99.0 99.2 99.3 99.4 99.6 99.7 99.9 -found 26 predictions from path traversal Error with prediction: snap lend_intergenic: 11785, rend_intergenic: 7563 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15894, rend_intergenic: 12643 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26629, rend_intergenic: 22231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 69557, rend_intergenic: 66738 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 92704, rend_intergenic: 76245 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133831, rend_intergenic: 126685 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 194216, rend_intergenic: 190285 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 203065, rend_intergenic: 196254 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252358, rend_intergenic: 245522 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256342, rend_intergenic: 253617 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 18 predictions persist after filtering for low support