-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2995

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 28, 360
Couldn't classify 619, 743
Sorry, prediction snap_scaffold_2995-snap.1-T1 fails validation.
(GGT)	 AG	28-360	GT	CGG
(TCC)	 AG	619-743	GT	AGG
-recovered snap_scaffold_2995-snap.1-T1, internal, 28, 360
-recovered snap_scaffold_2995-snap.1-T1, internal, 619, 743
Couldn't classify 619, 743
Sorry, prediction GlimmerHMM_glimmerT_63263-T1 fails validation.
(ATG)	 CA	102-360	GT	CGG
(TCC)	 AG	619-743	GT	AGG
-recovered GlimmerHMM_glimmerT_63263-T1, initial, 102, 360
-recovered GlimmerHMM_glimmerT_63263-T1, internal, 619, 743
Couldn't classify 30, 360
Couldn't classify 619, 743
Sorry, prediction pasa_asmbl_38622.p1 fails validation.
(TCT)	 GG	30-360	GT	CGG
(TCC)	 AG	619-743	GT	AGG
-recovered pasa_asmbl_38622.p1, internal, 619, 743
Couldn't classify 1, 360
Couldn't classify 619, 743
Sorry, prediction Augustus_model.g42237.t1 fails validation.
(TAG)	 GC	1-360	GT	CGG
(TCC)	 AG	619-743	GT	AGG
-recovered Augustus_model.g42237.t1, internal, 619, 743
Couldn't classify 63, 360
Couldn't classify 619, 743
Sorry, prediction GeneMark_model.110733_t fails validation.
(ATC)	 AG	63-360	GT	CGG
(TCC)	 AG	619-743	GT	AGG
-recovered GeneMark_model.110733_t, internal, 63, 360
-recovered GeneMark_model.110733_t, internal, 619, 743

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1085
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support