-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2993

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 826, 853
Sorry, prediction GeneMark_model.110731_t fails validation.
(ATG)	 TA	419-435	GT	GTG
(GTG)	 AG	462-491	GT	GTG
(GTG)	 AG	518-547	GT	GTG
(AGG)	 AG	572-601	GT	AGG
(AGG)	 AG	628-648	GT	AGG
(GCT)	 AG	670-687	GT	GTG
(GGA)	 AG	708-713	GT	AGG
(AGG)	 AG	740-760	GT	AGG
(GCT)	 AG	782-799	GT	GTG
(GTG)	 AG	826-853	GT	AGG
-recovered GeneMark_model.110731_t, initial, 419, 435
-recovered GeneMark_model.110731_t, internal, 462, 491
-recovered GeneMark_model.110731_t, internal, 518, 547
-recovered GeneMark_model.110731_t, internal, 572, 601
-recovered GeneMark_model.110731_t, internal, 628, 648
-recovered GeneMark_model.110731_t, internal, 670, 687
-recovered GeneMark_model.110731_t, internal, 708, 713
-recovered GeneMark_model.110731_t, internal, 740, 760
-recovered GeneMark_model.110731_t, internal, 782, 799
-recovered GeneMark_model.110731_t, internal, 826, 853

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1086
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support