-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2991

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 161
Couldn't classify 475, 570
Sorry, prediction snap_scaffold_2991-snap.1-T1 fails validation.
(GTT)	 AG	34-161	GT	AGG
(GTC)	 AG	475-570	GT	TGG
-recovered snap_scaffold_2991-snap.1-T1, internal, 34, 161
-recovered snap_scaffold_2991-snap.1-T1, internal, 475, 570
Couldn't classify 791, 852
Sorry, prediction GlimmerHMM_glimmerT_63262-T1 fails validation.
(ATG)	 AT	52-161	GT	AGG
(GTC)	 AG	475-570	GT	TGG
(CGT)	 AG	791-852	GT	CAG
-recovered GlimmerHMM_glimmerT_63262-T1, initial, 52, 161
-recovered GlimmerHMM_glimmerT_63262-T1, internal, 475, 570
-recovered GlimmerHMM_glimmerT_63262-T1, internal, 791, 852
Couldn't classify 34, 161
Couldn't classify 524, 570
Sorry, prediction GeneMark_model.110730_t fails validation.
(GTT)	 AG	34-161	GT	AGG
(GGA)	 AG	189-207	GT	AGG
(TAC)	 AG	524-570	GT	TGG
-recovered GeneMark_model.110730_t, internal, 34, 161
-recovered GeneMark_model.110730_t, internal, 189, 207
-recovered GeneMark_model.110730_t, internal, 524, 570
Valid prediction for Augustus_model.g42236.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1086
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support