-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_299

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107226_t
Couldn't classify 8265, 8396
Sorry, prediction GeneMark_model.107227_t fails validation.
(ATG)	 CA	7856-7883	GT	TGG
(TTA)	 AG	7946-7955	GT	ATG
(AAA)	 AG	8048-8071	GT	GAG
(AGA)	 AG	8099-8125	GT	GAG
(TAA)	 AG	8155-8184	GT	AGG
(AAA)	 AG	8211-8237	GT	GAG
(AAA)	 AG	8265-8396	GT	GAG
-recovered GeneMark_model.107227_t, initial, 7856, 7883
-recovered GeneMark_model.107227_t, internal, 7946, 7955
-recovered GeneMark_model.107227_t, internal, 8048, 8071
-recovered GeneMark_model.107227_t, internal, 8099, 8125
-recovered GeneMark_model.107227_t, internal, 8155, 8184
-recovered GeneMark_model.107227_t, internal, 8211, 8237
-recovered GeneMark_model.107227_t, internal, 8265, 8396
Couldn't classify 266, 336
Sorry, prediction GeneMark_model.107224_t fails validation.
(ACA)	 AG	266-336	GT	CAG
(AGT)	 AG	750-804	GT	AAG
(GAG)	 AG	830-845	TT	GAT
-recovered GeneMark_model.107224_t, terminal, 830, 845
-recovered GeneMark_model.107224_t, internal, 266, 336
-recovered GeneMark_model.107224_t, internal, 750, 804

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107225_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 8438
-exon list size: 44


building trellis

2.2    
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10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support