-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2987

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g42235.t1
add_exon() Sorry, Augustus_model.g42235.t1 465-796-terminal-1 is invalid.
Couldn't classify 487, 758
Couldn't classify 800, 1062
Sorry, prediction GeneMark_model.110728_t fails validation.
(ACT)	 AG	487-758	GT	GGG
(GTG)	 AG	800-1062	GT	TCG
-recovered GeneMark_model.110728_t, internal, 487, 758
-recovered GeneMark_model.110728_t, internal, 800, 1062
Valid prediction for GlimmerHMM_glimmerT_63261-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2987-snap.1-T1
add_exon() Sorry, snap_scaffold_2987-snap.1-T1 340-542-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1086
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support