-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2985

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 862, 1052
Sorry, prediction Augustus_model.g42234.t1 fails validation.
(AGA)	 AG	862-1052	GT	ACG
-recovered Augustus_model.g42234.t1, internal, 862, 1052

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 250, 288
Sorry, prediction GeneMark_model.110726_t fails validation.
(GAA)	 AG	250-288	GT	AGG
(GGA)	 AG	313-321	GT	AGG
(GAG)	 AG	380-397	GT	AAG
(GGA)	 AG	422-433	GT	AGG
(GGA)	 AG	458-469	GT	AGG
(GGA)	 AG	494-505	GT	AGG
(GGA)	 AG	530-541	GT	AGG
(TAG)	 AG	566-584	TC	GAT
-recovered GeneMark_model.110726_t, terminal, 566, 584
-recovered GeneMark_model.110726_t, internal, 250, 288
-recovered GeneMark_model.110726_t, internal, 313, 321
-recovered GeneMark_model.110726_t, internal, 380, 397
-recovered GeneMark_model.110726_t, internal, 422, 433
-recovered GeneMark_model.110726_t, internal, 458, 469
-recovered GeneMark_model.110726_t, internal, 494, 505
-recovered GeneMark_model.110726_t, internal, 530, 541
Couldn't classify 169, 541
Sorry, prediction snap_scaffold_2985-snap.1-T1 fails validation.
(GAC)	 AG	169-541	GT	AGG
-recovered snap_scaffold_2985-snap.1-T1, internal, 169, 541

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1086
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support