-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2984

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 801, 947
Couldn't classify 971, 1064
Sorry, prediction snap_scaffold_2984-snap.1-T1 fails validation.
(ATT)	 AG	801-947	GT	ACG
(TCT)	 AG	971-1064	GT	GGG
-recovered snap_scaffold_2984-snap.1-T1, internal, 801, 947
-recovered snap_scaffold_2984-snap.1-T1, internal, 971, 1064
Couldn't classify 971, 1053
Sorry, prediction GeneMark_model.110725_t fails validation.
(ATG)	 GT	329-354	GT	GTG
(AGC)	 AG	524-532	GT	GAG
(CAA)	 AG	765-947	GT	ACG
(TCT)	 AG	971-1053	GT	TGG
-recovered GeneMark_model.110725_t, initial, 329, 354
-recovered GeneMark_model.110725_t, internal, 524, 532
-recovered GeneMark_model.110725_t, internal, 765, 947
-recovered GeneMark_model.110725_t, internal, 971, 1053

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1087
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support