-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2980

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 178, 231
Couldn't classify 573, 1060
Sorry, prediction GeneMark_model.110722_t fails validation.
(GGA)	 AG	178-231	GT	GGG
(ACA)	 AG	260-268	GT	GAG
(ACA)	 AG	573-1060	GC	GAG
-recovered GeneMark_model.110722_t, internal, 178, 231
-recovered GeneMark_model.110722_t, internal, 260, 268
-recovered GeneMark_model.110722_t, internal, 573, 1060
Valid prediction for snap_scaffold_2980-snap.1-T1
Couldn't classify 544, 885
Sorry, prediction pasa_asmbl_38621.p4 fails validation.
(ATG)	 GA	544-885	AC	AGA

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1088
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support