-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2978

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 403, 520
Couldn't classify 834, 939
Sorry, prediction snap_scaffold_2978-snap.1-T1 fails validation.
(GGG)	 AG	403-520	GT	TGG
(GTC)	 AG	834-939	GT	GGG
-recovered snap_scaffold_2978-snap.1-T1, internal, 403, 520
-recovered snap_scaffold_2978-snap.1-T1, internal, 834, 939
Couldn't classify 94, 319
Couldn't classify 982, 1000
Sorry, prediction GeneMark_model.110720_t fails validation.
(AAC)	 AG	94-319	GT	CCG
(GTC)	 AG	834-958	GT	GTG
(GTG)	 AG	982-1000	GT	GGG
-recovered GeneMark_model.110720_t, internal, 94, 319
-recovered GeneMark_model.110720_t, internal, 834, 958
-recovered GeneMark_model.110720_t, internal, 982, 1000

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1089
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support