-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2977

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 894, 976
Sorry, prediction GlimmerHMM_glimmerT_63259-T1 fails validation.
(ATG)	 GT	106-265	GT	GGG
(CGG)	 AG	894-976	GT	ACG
-recovered GlimmerHMM_glimmerT_63259-T1, initial, 106, 265
-recovered GlimmerHMM_glimmerT_63259-T1, internal, 894, 976
Couldn't classify 114, 265
Couldn't classify 894, 1010
Sorry, prediction snap_scaffold_2977-snap.1-T1 fails validation.
(AGA)	 AG	114-265	GT	GGG
(CGG)	 AG	894-1010	GT	AGG
-recovered snap_scaffold_2977-snap.1-T1, internal, 114, 265
-recovered snap_scaffold_2977-snap.1-T1, internal, 894, 1010
Couldn't classify 128, 265
Couldn't classify 1040, 1060
Sorry, prediction GeneMark_model.110719_t fails validation.
(AGG)	 AG	128-265	GT	GGG
(CGG)	 AG	894-1002	GT	CTG
(GGA)	 AG	1040-1060	GT	GAG
-recovered GeneMark_model.110719_t, internal, 128, 265
-recovered GeneMark_model.110719_t, internal, 894, 1002
-recovered GeneMark_model.110719_t, internal, 1040, 1060
Couldn't classify 114, 265
Couldn't classify 894, 1010
Sorry, prediction Augustus_model.g42233.t1 fails validation.
(AGA)	 AG	114-265	GT	GGG
(CGG)	 AG	894-1010	GT	AGG
-recovered Augustus_model.g42233.t1, internal, 114, 265
-recovered Augustus_model.g42233.t1, internal, 894, 1010

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1089
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support