-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2975

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 134, 145
Couldn't classify 969, 1071
Sorry, prediction GeneMark_model.110718_t fails validation.
(AGA)	 AG	134-145	GT	GAG
(ACA)	 AG	191-268	GC	GGG
(AGA)	 AG	289-393	GT	GAG
(AAA)	 AG	416-427	GT	AGG
(TGT)	 AG	581-676	GT	AGG
(GGC)	 AG	877-886	GT	AGG
(ACA)	 AG	969-1071	GC	GAG
-recovered GeneMark_model.110718_t, internal, 134, 145
-recovered GeneMark_model.110718_t, internal, 191, 268
-recovered GeneMark_model.110718_t, internal, 289, 393
-recovered GeneMark_model.110718_t, internal, 416, 427
-recovered GeneMark_model.110718_t, internal, 581, 676
-recovered GeneMark_model.110718_t, internal, 877, 886
-recovered GeneMark_model.110718_t, internal, 969, 1071

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1090
-exon list size: 18


building trellis

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25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support