-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2973

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 385, 487
Sorry, prediction GlimmerHMM_glimmerT_63258-T1 fails validation.
(GTG)	 AG	385-487	GT	AGG
(GAC)	 AG	608-625	AG	AAA
-recovered GlimmerHMM_glimmerT_63258-T1, terminal, 608, 625
-recovered GlimmerHMM_glimmerT_63258-T1, internal, 385, 487
Couldn't classify 385, 487
Couldn't classify 849, 956
Sorry, prediction snap_scaffold_2973-snap.1-T1 fails validation.
(GTG)	 AG	385-487	GT	AGG
(GTG)	 AG	663-752	GT	GGG
(TAC)	 AG	849-956	GT	AGG
-recovered snap_scaffold_2973-snap.1-T1, internal, 385, 487
-recovered snap_scaffold_2973-snap.1-T1, internal, 663, 752
-recovered snap_scaffold_2973-snap.1-T1, internal, 849, 956
Couldn't classify 385, 487
Couldn't classify 849, 956
Sorry, prediction Augustus_model.g42232.t1 fails validation.
(GTG)	 AG	385-487	GT	AGG
(TAC)	 AG	849-956	GT	AGG
-recovered Augustus_model.g42232.t1, internal, 385, 487
-recovered Augustus_model.g42232.t1, internal, 849, 956
Couldn't classify 36, 104
Couldn't classify 849, 956
Sorry, prediction GeneMark_model.110717_t fails validation.
(GAG)	 AG	36-104	GT	CTG
(GTG)	 AG	385-487	GT	AGG
(GTG)	 AG	663-752	GT	GGG
(TAC)	 AG	849-956	GT	AGG
-recovered GeneMark_model.110717_t, internal, 36, 104
-recovered GeneMark_model.110717_t, internal, 385, 487
-recovered GeneMark_model.110717_t, internal, 663, 752
-recovered GeneMark_model.110717_t, internal, 849, 956

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1090
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support